PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00083596001
Common NameGSBRNA2T00083596001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 262aa    MW: 28940.1 Da    PI: 5.9058
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00083596001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.5e-18134183255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          gy+GVr+++ +g+++AeIrdp+    r +r++lg+f tae Aa+a+++a+  ++g
  GSBRNA2T00083596001 134 GYRGVRQRP-WGKFAAEIRDPK----RaTRVWLGTFETAENAARAYDRAAIGFRG 183
                          8********.**********83....57*********************987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-12134182IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-21134192IPR016177DNA-binding domain
PROSITE profilePS5103223.986134191IPR001471AP2/ERF domain
SMARTSM003802.2E-36134197IPR001471AP2/ERF domain
PRINTSPR003672.3E-11135146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-31135191IPR001471AP2/ERF domain
CDDcd000182.81E-31135191No hitNo description
PRINTSPR003672.3E-11157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MQYPYTRPGF IGASDTQTRT WYQYQEPLSP EQELSVIVSA LQHVISGESD TTPYQVFSSD  60
STVIMPRSDS NTCQVCRIDG CLGCDYFFAP NQRIEKRQHV VVEEDGVTST SGGRDRSAMA  120
EGGKIRKRRN KKNGYRGVRQ RPWGKFAAEI RDPKRATRVW LGTFETAENA ARAYDRAAIG  180
FRGPRAKLNF PFKDYTSSPV AADTSASGSA SASVSAVDSG EAEQWRGGEC DMDEYLKMMM  240
MMDFGNGDSS DSGNTIADMF Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-24131193265ATERF1
3gcc_A2e-24131193265ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.119680.0flower
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00083596001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013730776.11e-180ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ068e-95EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A078IAL90.0A0A078IAL9_BRANA; BnaC03g66140D protein
STRINGBo3g168910.11e-179(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-81redox responsive transcription factor 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  3. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  4. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  5. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  6. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]