PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00083685001
Common NameGSBRNA2T00083685001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 85aa    MW: 9223.58 Da    PI: 7.5164
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00083685001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer34.45.2e-112293058
          ZF-HD_dimer 30 psegeegtaaalkCaACgCHRnFHRreve 58
                         + +g+egta++l CaAC+ HR+FHR + +
  GSBRNA2T00083685001  2 S-SGKEGTAESLLCAACDFHRSFHRNKID 29
                         3.4899*******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-12138IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.7E-10127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MSSGKEGTAE SLLCAACDFH RSFHRNKIDG MFVVKFNSFG LSPRPLVSRH VSPVMMSFAR  60
GGKDPAESST EDLNSFINLL VVME*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.100444e-46flower| microspore-derived embryo| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00083685001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596192.13e-44PREDICTED: zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW71e-34ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A078IAP81e-54A0A078IAP8_BRANA; BnaA07g02030D protein
TrEMBLA0A3P6B3C75e-54A0A3P6B3C7_BRACM; Uncharacterized protein
TrEMBLM4FEU35e-54M4FEU3_BRARP; Uncharacterized protein
STRINGBra039615.1-P8e-55(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.15e-37homeobox protein 24
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]