PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00083773001

Common Name

GSBRNA2T00083773001, LOC106453693

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 166aa MW: 18725.5 Da PI: 4.7344

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00083773001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.7	1.6e-12	104	164	2	67
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk 67 Y++Y+ + GF+vr+++++++ n++ ++ +vCskeg+r+e k k ++ +r++tr+gC+a++ GSBRNA2T00083773001 104 AYRKYGCNHGFDVRRQRTSRK--NQKLVRVVYVCSKEGFRQEPKVK---KSFSRPTTRCGCQARIS 164 59**********9986665..999************9877...999*********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-9	104	163	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MENSHLSGQE TVPISQGESS LQVSGETRLL SQNPDELLLE EKDDTLSSDD ASVSDFDEEE 60 NIDNNEEHLQ TKAVDALEAN NENQKSYELC IGMEFSSDES AYKAYRKYGC NHGFDVRRQR 120 TSRKNQKLVR VVYVCSKEGF RQEPKVKKSF SRPTTRCGCQ ARISC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00083773001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013751367.1	1e-120	uncharacterized protein LOC106453693
TrEMBL	A0A078I8Z4	1e-118	A0A078I8Z4_BRANA; BnaC01g30190D protein
STRING	Bo1g099910.1	1e-104	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6200	6	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	8e-08	FAR1-related sequence 10

Link Out ? help Back to Top
Entrez Gene	106453693

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]