PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00083814001
Common NameGSBRNA2T00083814001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 221aa    MW: 26235 Da    PI: 7.0752
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00083814001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.96.3e-13281518128
                  NAM   8 hPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                          +P+de +v++yLk  ++++k   +++   +e+++y+++Pw+     +a +++ yf + ++++ + gk    a  sg W+   +dk ++++
  GSBRNA2T00083814001  28 EPEDEIMVSYYLKMMINNRKSWPDHFlrDEEANVYNLNPWSSF---NAPNSDRYFIFVKRRTDSCGKTDGSA--SGCWRIMARDKLIKCE 112
                          7****************9994443441145669*******974...44556777777777777777777665..8************998 PP

                  NAM  96 .kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                           +g+  g kk+L f      + ++++ e+   vm+eyrl
  GSBRNA2T00083814001 113 eTGRILGFKKILKFCennkkRSKEEEEEEIICVMEEYRL 151
                          67888**********555333344455566789999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.08321167IPR003441NAC domain
PfamPF023658.2E-927151IPR003441NAC domain
SuperFamilySSF1019411.83E-1829165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEDESIVSQE DMGDDYSILS SQEENQIEPE DEIMVSYYLK MMINNRKSWP DHFLRDEEAN  60
VYNLNPWSSF NAPNSDRYFI FVKRRTDSCG KTDGSASGCW RIMARDKLIK CEETGRILGF  120
KKILKFCENN KKRSKEEEEE EIICVMEEYR LVDKWKQDQV ICTIRELLQH EVTTLLAKHL  180
SFLPKWIKPF SRKHLMPMSH RRCGIYVYRI HQGMRSSRTI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00083814001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013658275.11e-122uncharacterized protein LOC106363008
TrEMBLA0A078I6561e-163A0A078I656_BRANA; BnaA09g19790D protein
STRINGBra029571.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1822159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60380.14e-45NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]