PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00083823001

Common Name

GSBRNA2T00083823001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 287aa MW: 32109.6 Da PI: 4.3907

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00083823001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.2e-05	167	201	16	55
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + ++ L++l+ + +K + a++L +AveYIk Lq GSBRNA2T00083823001 167 LGDRVTALQQLVSPF-----GKTDTASVLNEAVEYIKFLQ 201 556666677777776.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.7	151	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.58E-7	161	204	No hit	No description
SuperFamily	SSF47459	3.93E-11	161	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-9	165	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MTGEFEMAGT WWSSPINTAT SVFSGYSLPR PTESSLDITD FGWQNFDNKT NDHNDDFMNM 60 HNSFFEGLFD PNEQLLSDSW PKTTISAKSE LLESFPFLDN ILLIDSEAHD QIKDHKSLEQ 120 TTQDCMNLTS KAQLKENNDE NSPRLLKRAR IDTLSPLPSF KVRKEKLGDR VTALQQLVSP 180 FGKTDTASVL NEAVEYIKFL QEQVTVLSNP DQNTRGSVQQ QQCSDKQSIN SSQEEEECSS 240 RRHLDLASRG LCLMPISASY PVAAAAASGA EMNTSDFWNL TFAMNL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Differentiating root endodermis. {ECO:0000269\|PubMed:16581911}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00083823001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009114498.2	0.0	PREDICTED: transcription factor bHLH114
Swissprot	Q9M0X8	1e-133	BH114_ARATH; Transcription factor bHLH114
TrEMBL	A0A078IAP9	0.0	A0A078IAP9_BRANA; BnaA09g19880D protein
STRING	Bra029562.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14428	17	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05170.1	6e-94	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]