PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00083952001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 254aa    MW: 29748.7 Da    PI: 6.8441
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00083952001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.1e-084385146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         +g WT+e+ el v+  k+ G++ W+t a  mg  + ++++k+ w+ 
  GSBRNA2T00083952001 43 KGVWTKEDLELVVQHQKKRGND-WRTLADAMG--KHRNHVKDAWRR 85
                         799*******************.********9..7899***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.7E-6983IPR009057Homeodomain-like
PROSITE profilePS500906.8763887IPR017877Myb-like domain
SuperFamilySSF466898.97E-843104IPR009057Homeodomain-like
PfamPF139212.5E-1046104No hitNo description
PROSITE profilePS500906.70288156IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.8E-592156IPR009057Homeodomain-like
SuperFamilySSF466895.72E-5136214IPR009057Homeodomain-like
PROSITE profilePS500907.34158211IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVMNCKAHKQ VRGCWKEIAT ALPWRPYTGV YYRAHTLFEE GSKGVWTKED LELVVQHQKK  60
RGNDWRTLAD AMGKHRNHVK DAWRRIRLAS KKRGHWSMEE YQSLFDLVNK DLRIKVFKEK  120
HSKHGMLRDN IPWMAISDEL GTRDHAVCCL KWYDQLTSPM VAKGIWANVD DYRLLDELTN  180
LDAACVDDVD WDNILDNRDG DVCRSRWNQM VNHIGIPGSK TFAEQVEILS QRYCPDIAED  240
REDFDNRPFD PED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00083952001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013689979.10.0DNA ligase 1
TrEMBLA0A3P6CC720.0A0A3P6CC72_BRAOL; Uncharacterized protein
STRINGBo4g140750.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-157MYB_related family protein