PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00084235001
Common NameGSBRNA2T00084235001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 166aa    MW: 18593 Da    PI: 10.111
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00084235001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1031.9e-322073255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  GSBRNA2T00084235001 20 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 73
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-161773IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-281873IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-242073IPR006447Myb domain, plants
PfamPF002491.6E-72172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
RDFKRTSSSV VSLKRSIRAP RMRWTSTLHA HFVHAVQLLG GHERATPKSV LELMNVKDLT  60
LAHVKSHLQM YRTVKCTDKR SSGERKVEKE AEQKTEDNNN NNEDADADPI SPNSSSVQKT  120
QRSPWSSTKG VSMSISQADP HMEINRITKD DTMCKSSSDL TLIKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-182175357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-182175458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During ovule development, first expressed in the inner integument primordium and then on the abaxial side of the inner integument. {ECO:0000269|PubMed:16623911}.
UniprotTISSUE SPECIFICITY: Expressed in the periphery of the primary root apex and lateral root. {ECO:0000269|PubMed:15286295}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00084235001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0486911e-138AY048691.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI4 (KAN4) mRNA, complete cds.
GenBankBT0260531e-138BT026053.1 Arabidopsis thaliana At5g42630 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123685.11e-107PREDICTED: probable transcription factor KAN4
RefseqXP_013726061.11e-107probable transcription factor KAN4
SwissprotQ9FJV53e-80KAN4_ARATH; Probable transcription factor KAN4
TrEMBLA0A078JS441e-119A0A078JS44_BRANA; BnaA02g36680D protein (Fragment)
STRINGBra035311.1-P1e-102(Brassica rapa)
STRINGBo2g115180.11e-104(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65722844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.16e-74G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  3. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  4. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]