PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00084741001
Common NameGSBRNA2T00084741001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 168aa    MW: 19007 Da    PI: 9.9973
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00084741001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3331.1e-1051146580
                          -..-HHHHT.T-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE......EEETTE....EEE-TTHHHHHH CS
                   B3   5 ltpsdvlks.grlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliy....rkksgr....yvltkGWkeFvk 70 
                          lt+ dv k  + l++p + + +h               +g+ke++ t+ + d++ ++We+k++          +    y+l+  W++ vk
  GSBRNA2T00084741001  51 LTTTDVDKGqSHLSIPMSSLVTHsfmtsdekekienrvKGDKEGGLTVEVIDPKLKVWELKMRRshetG----KtsslYYLAYQWNHVVK 136
                          5666666655569******99999***9999999999988999*******************7666533....13347************ PP

                          HHT--TT-EE CS
                   B3  71 angLkegDfv 80 
                          an+ k+gD +
  GSBRNA2T00084741001 137 ANKFKQGDEL 146
                          *******965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037541.6E-2231136IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.101.1E-1341161IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-1343161IPR015300DNA-binding pseudobarrel domain
CDDcd100171.80E-748159No hitNo description
PROSITE profilePS508639.2267165IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MANGDVGVEE KLMPLKKRRS LRVVVELTGK LKETITKMGG TEETLITKRT LTTTDVDKGQ  60
SHLSIPMSSL VTHSFMTSDE KEKIENRVKG DKEGGLTVEV IDPKLKVWEL KMRRSHETGK  120
TSSLYYLAYQ WNHVVKANKF KQGDELQLWS FRSQQKLCLA LVLLQGE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00084741001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013690191.11e-118B3 domain-containing protein At3g25182-like
RefseqXP_022569069.11e-118B3 domain-containing protein At3g25182-like
TrEMBLA0A078FPM41e-117A0A078FPM4_BRANA; BnaC04g48510D protein
STRINGXP_006411545.18e-54(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM200134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.11e-13B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]