PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00084799001
Common NameGSBRNA2T00084799001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 263aa    MW: 31078.4 Da    PI: 5.5316
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00084799001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.31.8e-36201122103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F++k y+i+ed+++++++sws+++nsf+v+++e+fa  +Lp yFkh+nf+SFvRQLn+YgFkk+++e+         weF++++F +g+k
  GSBRNA2T00084799001  20 FITKAYNIVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPIYFKHNNFSSFVRQLNTYGFKKIDTER---------WEFANEYFLRGQK 100
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++ikr+k++
  GSBRNA2T00084799001 101 QLLKNIKRRKTS 112
                          *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.5E-5216109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.98E-3516109IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-3616109IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.3E-182043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3020109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-185870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-187183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDYNLPTPLE VLRETGPTPF ITKAYNIVED SSTNNIVSWS RDNNSFIVWE PETFALICLP  60
IYFKHNNFSS FVRQLNTYGF KKIDTERWEF ANEYFLRGQK QLLKNIKRRK TSSQTEMLEK  120
FGLEREIQGM RRDKAALVIE LARLRQKQES VKTYLRFMEE KLIITERKQQ MMMDFLLKKV  180
KNPSFLENIK KRKQQEIENL EQSEEMTSSH GVEDYETFVK AEPEEYGDQF GGVFGNVDEL  240
HIASMEDQRQ DDRMCILGEH LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-241511212123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00541DAPTransfer from AT5G43840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00084799001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123909.10.0PREDICTED: heat stress transcription factor A-6a
SwissprotQ1PDN31e-130HFA6A_ARATH; Heat stress transcription factor A-6a
TrEMBLA0A078FRE10.0A0A078FRE1_BRANA; BnaA02g22350D protein
STRINGBra035993.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156831416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43840.11e-133heat shock transcription factor A6A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]