PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00085186001

Common Name

GSBRNA2T00085186001, LOC106434118

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 147aa MW: 17209.1 Da PI: 10.627

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00085186001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	49.1	1.5e-15	15	113	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH....HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.X CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk....yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.F 86 F k +y +++d++l++++sws++++sf+++d+ ef+++vLp+ + nf+ F+ L+ YgF +vk ++++ + h++ F GSBRNA2T00085186001 15 FYKGVYAVVDDSSLDSVVSWSKKKRSFIIWDPIEFQRRVLPTgrerRIRSLNFSMFMADLKYYGFIRVKGSKHR-------YHIGHPKyF 97 88899*********************************86555589999***************9988.......777888779 PP XXXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkks 102 +gk el++k++ +++ GSBRNA2T00085186001 98 VRGKPELMKKMQEEAH 113 *****999998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.4E-18	9	106	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.8E-10	11	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.94E-16	11	109	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	6.6E-17	15	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MNVPVTVTDY SLSSFYKGVY AVVDDSSLDS VVSWSKKKRS FIIWDPIEFQ RRVLPTGRER 60 RIRSLNFSMF MADLKYYGFI RVKGSKHRYH IGHPKYFVRG KPELMKKMQE EAHEKRMHKF 120 EQDRAMRKKA KARAMELADA LGDLAL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00085186001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241146	1e-110	AC241146.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH072P15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013730404.1	1e-105	heat stress transcription factor A-4a
Refseq	XP_022566820.1	1e-105	heat stress transcription factor A-4a-like
TrEMBL	A0A078FS23	1e-103	A0A078FS23_BRANA; BnaC03g44290D protein
TrEMBL	A0A3P6AKD9	1e-103	A0A3P6AKD9_BRAOL; Uncharacterized protein
STRING	Bra022949.1-P	2e-99	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18172	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	3e-10	Winged helix-turn-helix transcription repressor DNA-binding

Link Out ? help Back to Top
Entrez Gene	106434118

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]