PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00085351001

Common Name

GSBRNA2T00085351001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 271aa MW: 30868.2 Da PI: 9.06

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00085351001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.8	2.8e-14	48	92	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky GSBRNA2T00085351001 48 RENWTEQEHDKFIEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 92 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.39E-16	42	98	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.766	43	97	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-7	46	98	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-17	46	95	IPR006447	Myb domain, plants
SMART	SM00717	2.0E-11	47	95	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-12	48	92	IPR001005	SANT/Myb domain
CDD	cd00167	4.09E-9	50	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MNMNLPGFST TLPHSKTTMP VSARSHTMSF SEDPTKMIRK PYTITKSREN WTEQEHDKFI 60 EALHLFDRDW KKIEAFVGSK TVIQIRSHAQ KYFLKVQKNG TNEHLPPPRP KRKANHPYPQ 120 KASKSVALAT SNALLEHEYL YTTDPQPLIS TPNQGLMRCN VITPIPVIKE ELGVLENCCS 180 TSSSSSIRDQ MRTRTVTETD DQRVMPNFDE VYSFIGSVFD PKTTGHAQRL KQMDPINLET 240 VLLLMKNLSV NLSSPEFEEQ RRLISSYNGE *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00085351001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013586129.1	0.0	PREDICTED: protein REVEILLE 3 isoform X1
Swissprot	Q6R0H0	1e-148	RVE3_ARATH; Protein REVEILLE 3
TrEMBL	A0A078FPX8	0.0	A0A078FPX8_BRANA; BnaC05g00500D protein
STRING	Bo5g002430.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1290	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01520.1	1e-147	MYB_related family protein

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]