PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085398001
Common NameGSBRNA2T00085398001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 260aa    MW: 29684 Da    PI: 6.1287
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085398001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.44.2e-3451493128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..............kvkaeekewyfFskrdkkyatgkrknrat 78 
                          +Gf F+Ptdeelv +yL++k+ g++  ++e+i+ev+i +++Pw+L++              kvk+++  wyfFs+rd    +g+r+nr t
  GSBRNA2T00085398001   5 VGFGFRPTDEELVGYYLHNKILGRNWLVQEFISEVNISDFDPWNLRSslsvslsvslsvqsKVKSRDLVWYFFSRRDA---NGDRQNRRT 91 
                          7************************999899**************8558999***9988777777777******9987...799****** PP

                  NAM  79 ksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkge..ktdWvmheyrl 128
                          +sg+Wk tg   +v+++         ++g kk+Lvf  gr+++++  k+dWv+hey+ 
  GSBRNA2T00085398001  92 SSGFWKITGDPVDVKDQwgtwcgFAGKIGYKKVLVFRMGRSSSSQspKSDWVIHEYHY 149
                          ****************98777765556**********8866554444*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.0143167IPR003441NAC domain
PfamPF023651.3E-225148IPR003441NAC domain
SuperFamilySSF1019411.23E-375167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDGIVGFGFR PTDEELVGYY LHNKILGRNW LVQEFISEVN ISDFDPWNLR SSLSVSLSVS  60
LSVQSKVKSR DLVWYFFSRR DANGDRQNRR TSSGFWKITG DPVDVKDQWG TWCGFAGKIG  120
YKKVLVFRMG RSSSSQSPKS DWVIHEYHYT LVPENQRTYV ICRLEYKGHD MSILSSNTTD  180
PVPTFVPNAA NSTASGSVVS QSVQGNLGSF NTFFDYDSAN QGQWFNGDFN LEQPVVPYDD  240
GTYRIWDYVV EENFSRYRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-18616420162NO APICAL MERISTEM PROTEIN
1ut4_B1e-18616420162NO APICAL MERISTEM PROTEIN
1ut7_A1e-18616420162NO APICAL MERISTEM PROTEIN
1ut7_B1e-18616420162NO APICAL MERISTEM PROTEIN
3swm_A2e-18616423165NAC domain-containing protein 19
3swm_B2e-18616423165NAC domain-containing protein 19
3swm_C2e-18616423165NAC domain-containing protein 19
3swm_D2e-18616423165NAC domain-containing protein 19
3swp_A2e-18616423165NAC domain-containing protein 19
3swp_B2e-18616423165NAC domain-containing protein 19
3swp_C2e-18616423165NAC domain-containing protein 19
3swp_D2e-18616423165NAC domain-containing protein 19
4dul_A1e-18616420162NAC domain-containing protein 19
4dul_B1e-18616420162NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085398001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639066.10.0PREDICTED: NAC domain-containing protein 1-like
SwissprotQ0WV962e-84NAC1_ARATH; NAC domain-containing protein 1
TrEMBLA0A078FL900.0A0A078FL90_BRANA; BnaC05g00890D protein
TrEMBLA0A3P6EZD80.0A0A3P6EZD8_BRAOL; Uncharacterized protein
STRINGBo5g002810.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.18e-74NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]