PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085407001
Common NameGSBRNA2T00085407001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 426aa    MW: 48515.1 Da    PI: 6.1546
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085407001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.39.4e-3041372128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           pGf+F+P+deelv +yL++k+ g++  ++ vi++++i++++PwdL+  +k+k+++  wyf s+ ++   +g r++r+t sg Wk tg  
  GSBRNA2T00085407001   4 KPGFEFRPHDEELVGFYLRQKLLGNHSLVDGVIRDIKICSLDPWDLRfqSKIKSRDPFWYFLSRIEN---SGGRQSRTTPSGSWKLTGDP 90 
                          59************************999899**************842367677778888777665...589****************9 PP

                  NAM  90 kevlsk......kgelvglkktLvfykgrapk..gektdWvmheyrl 128
                            v ++       + ++g k++L+f kg++++  ++ ++Wvmhe + 
  GSBRNA2T00085407001  91 VYVNDRwgnltgFRGKIGYKRVLTFSKGKSSSssSSISEWVMHELHY 137
                          9999997666654445**********986655015679******875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.7813158IPR003441NAC domain
SuperFamilySSF1019411.18E-334158IPR003441NAC domain
PfamPF023651.3E-175136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MEEKPGFEFR PHDEELVGFY LRQKLLGNHS LVDGVIRDIK ICSLDPWDLR FQSKIKSRDP  60
FWYFLSRIEN SGGRQSRTTP SGSWKLTGDP VYVNDRWGNL TGFRGKIGYK RVLTFSKGKS  120
SSSSSSISEW VMHELHYTHT DLPEHKRSTY VICRLEYKGD DVTILSVPPS VANSASSVVD  180
QSLQGNSGHY NTLSEYDSGH QFNGNYDMQQ SFQGYSEYFN PTSDYGLANQ SYWFGNLQQQ  240
VPYSAPYQDH SDMLLRQVVE ENFPFLVDER TCMREDPSHH RPKNPITGIL PGDSSDDDTD  300
STIGRGTWSS TDSVGSKDGT YHTPIDATPS VSTVEPLHNH EPQEQPKQLE LQLQGKEKVI  360
NKQQRECEWK MADDWIKKAP STSAVKQSWI VLEDISQKNS RWIYLKNIIG LLLFIIIIGW  420
IILVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-12513417137Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085407001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586611.10.0PREDICTED: NAC domain-containing protein 1-like
SwissprotQ0WV961e-148NAC1_ARATH; NAC domain-containing protein 1
TrEMBLA0A078FL960.0A0A078FL96_BRANA; BnaC05g00940D protein
STRINGBo5g002860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.11e-117NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]