PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00085413001

Common Name

GSBRNA2T00085413001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 203aa MW: 23621.6 Da PI: 9.0206

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00085413001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	128.2	6.2e-40	4	132	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 p+G+rF Pt+ee+v++yL+ k +g + ++++vi++++i++++Pw+Lp + +++++++ wyfF +++k+y++g+r+ r+tksg+Wk+tg GSBRNA2T00085413001 4 PVGLRFLPTEEEIVDHYLRLKNHGGSntSHVDQVISTINICNFDPWELPrQsRMESKDQVWYFFGRKEKRYNRGERQIRKTKSGFWKKTG 93 89*****************9998866677789**********95258888999*************************** PP NAM 88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127 + ++++k ++e++g k++Lvf+ ++g+kt+W+mhey GSBRNA2T00085413001 94 VTMDIKRKrsgHREKIGEKRVLVFH----SSGSKTNWIMHEYD 132 **998888888******....7999*******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.85E-39	3	135	IPR003441	NAC domain
PROSITE profile	PS51005	38.375	3	154	IPR003441	NAC domain
Pfam	PF02365	2.0E-22	4	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MVNPVGLRFL PTEEEIVDHY LRLKNHGGSN TSHVDQVIST INICNFDPWE LPRQSRMESK 60 DQVWYFFGRK EKRYNRGERQ IRKTKSGFWK KTGVTMDIKR KRSGHREKIG EKRVLVFHSS 120 GSKTNWIMHE YDAACLSPTQ EPKNPHQLSG FFDKKQETEL EEAIQGAFDN LSSYDWKYLL 180 GDDEQSKTVS MQNSLTGVFD WA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-24	4	131	18	140	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-24	4	131	18	140	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-24	4	131	18	140	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-24	4	131	18	140	NO APICAL MERISTEM PROTEIN
3swm_A	8e-24	4	131	21	143	NAC domain-containing protein 19
3swm_B	8e-24	4	131	21	143	NAC domain-containing protein 19
3swm_C	8e-24	4	131	21	143	NAC domain-containing protein 19
3swm_D	8e-24	4	131	21	143	NAC domain-containing protein 19
3swp_A	8e-24	4	131	21	143	NAC domain-containing protein 19
3swp_B	8e-24	4	131	21	143	NAC domain-containing protein 19
3swp_C	8e-24	4	131	21	143	NAC domain-containing protein 19
3swp_D	8e-24	4	131	21	143	NAC domain-containing protein 19
4dul_A	9e-24	4	131	18	140	NAC domain-containing protein 19
4dul_B	9e-24	4	131	18	140	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00085413001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013695676.1	1e-142	NAC domain-containing protein 5-like
Swissprot	O81914	1e-66	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	A0A078FLA1	1e-151	A0A078FLA1_BRANA; BnaC05g00990D protein
STRING	Bra033299.1-P	1e-128	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	4e-69	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]