PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085416001
Common NameGSBRNA2T00085416001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 213aa    MW: 24412.5 Da    PI: 9.3014
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085416001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.14.2e-3751303127
                  NAM   3 pGfrFhPtdeelvveyLkkk.vegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          +GfrF Ptd+e+v++y++ k ++g++ ++++++i  vdi++++Pw+Lp k + +++++ wyfF+++d+   +g+r++r+tksg+Wk+tg 
  GSBRNA2T00085416001   5 VGFRFIPTDQEIVDYYIRLKnISGSDtNHVDKAIGAVDICSFDPWELPsKsRRESRDQIWYFFCRKDN---RGERQSRKTKSGFWKKTGP 91 
                          7***************99773555555667777***************433445577799*****988...589**************** PP

                  NAM  89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                          + ++++k  ++e++g k++Lvf++  + + +k+ Wvmhey 
  GSBRNA2T00085416001  92 TMDIFQKrgDREKIGEKRVLVFHS--SGSKSKSAWVMHEYV 130
                          ******9887889**********4..444469********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.3483150IPR003441NAC domain
SuperFamilySSF1019415.75E-374150IPR003441NAC domain
PfamPF023655.0E-235130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MENRVGFRFI PTDQEIVDYY IRLKNISGSD TNHVDKAIGA VDICSFDPWE LPSKSRRESR  60
DQIWYFFCRK DNRGERQSRK TKSGFWKKTG PTMDIFQKRG DREKIGEKRV LVFHSSGSKS  120
KSAWVMHEYV ATFLPPTDHM TYTLCKLKFK GDASDLPSSS GADGGGDVDE HNQFLITHNS  180
GGYEVSKSSL DASKENMMMY KGLRWENTIK WI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-18612920140NO APICAL MERISTEM PROTEIN
1ut4_B6e-18612920140NO APICAL MERISTEM PROTEIN
1ut7_A6e-18612920140NO APICAL MERISTEM PROTEIN
1ut7_B6e-18612920140NO APICAL MERISTEM PROTEIN
3swm_A6e-18612923143NAC domain-containing protein 19
3swm_B6e-18612923143NAC domain-containing protein 19
3swm_C6e-18612923143NAC domain-containing protein 19
3swm_D6e-18612923143NAC domain-containing protein 19
3swp_A6e-18612923143NAC domain-containing protein 19
3swp_B6e-18612923143NAC domain-containing protein 19
3swp_C6e-18612923143NAC domain-containing protein 19
3swp_D6e-18612923143NAC domain-containing protein 19
4dul_A6e-18612920140NAC domain-containing protein 19
4dul_B6e-18612920140NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085416001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638581.11e-120PREDICTED: NAC domain-containing protein 5-like isoform X3
RefseqXP_013638582.11e-120PREDICTED: NAC domain-containing protein 5-like isoform X4
SwissprotO819142e-69NAC5_ARATH; NAC domain-containing protein 5
TrEMBLA0A078FSE91e-158A0A078FSE9_BRANA; BnaC05g01020D protein
STRINGBo5g002930.11e-113(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.14e-68NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]