PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085419001
Common NameGSBRNA2T00085419001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 375aa    MW: 39326.4 Da    PI: 5.4474
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085419001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.84.5e-3661402127
                  NAM   2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                          p+GfrF+Ptdee+ + yLk k ++g++ +++evi++vdiy+++P++L  +   + k++++ +yfF++++++y++g+r++r+tksg Wk+t
  GSBRNA2T00085419001   6 PVGFRFRPTDEEIFNPYLKSKnMDGNTSHVDEVISTVDIYSFDPSELAsQsssTRKETDNVLYFFCPKENRYNRGERQSRKTKSGSWKKT 95 
                          89*****************99355556888889**************833332222244466**************************** PP

                  NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkge..ktdWvmheyr 127
                          g ++++++k  + e++g k+++vf   +   g+  k+dWvmhey 
  GSBRNA2T00085419001  96 GVTTNIMRKrgDCEKIGEKRVFVFQYSKILGGTklKSDWVMHEYV 140
                          ********9666678*********855544444339********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.9515162IPR003441NAC domain
SuperFamilySSF1019411.83E-385162IPR003441NAC domain
PfamPF023659.1E-216140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MVDPHPVGFR FRPTDEEIFN PYLKSKNMDG NTSHVDEVIS TVDIYSFDPS ELASQSSSTR  60
KETDNVLYFF CPKENRYNRG ERQSRKTKSG SWKKTGVTTN IMRKRGDCEK IGEKRVFVFQ  120
YSKILGGTKL KSDWVMHEYV ATFVSPAQTP MVTYTLCKVM FKGDASDLPS SSAAPAGGGG  180
GRGCDGGCDG GGGGCDGGGG GGGCGGGGGS GCGRGGGGGG DGGGCGGGGG GDGGAGDGGC  240
GCGGGGGCDG CGGGGGEFEH THSLIIPMNN PGGGMSAEAE RSSSELHNPR QFSGFLHLEE  300
ETQMEDAIRR AINSLSPHDL NCLLNNDYDD EEQGNTQEVD TKIRQENQAM FFYLKNMIPL  360
KMRSIKSTFY NFQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-19616618169NO APICAL MERISTEM PROTEIN
1ut4_B1e-19616618169NO APICAL MERISTEM PROTEIN
1ut7_A1e-19616618169NO APICAL MERISTEM PROTEIN
1ut7_B1e-19616618169NO APICAL MERISTEM PROTEIN
4dul_A1e-19616618169NAC domain-containing protein 19
4dul_B1e-19616618169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085419001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022559041.11e-176NAC transcription factor 56-like
TrEMBLA0A078FQS90.0A0A078FQS9_BRANA; BnaC05g01030D protein
STRINGBo5g002950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.14e-61NAC domain containing protein 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]