PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085675001
Common NameGSBRNA2T00085675001, LOC106380306
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 181aa    MW: 20302.9 Da    PI: 5.9139
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085675001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.72e-3871071100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++Cv+apyf+ e+ +++fa++hk+FGasn +kl+++lp+++r da++++ yeA+ r++dP+yG+v+ i++lqq++ +
  GSBRNA2T00085675001   7 PCGACKFLRRKCVEGCVFAPYFCYEEgSSSFAAIHKVFGASNFSKLISHLPDHDRCDAVRTISYEAQSRLHDPIYGCVSQIFSLQQKVVS 96 
                          7***********************9979************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+a+++ll+ee
  GSBRNA2T00085675001  97 LQAQVVLLREE 107
                          *****999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.5646108IPR004883Lateral organ boundaries, LOB
PfamPF031958.3E-367105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGGLGSPCGA CKFLRRKCVE GCVFAPYFCY EEGSSSFAAI HKVFGASNFS KLISHLPDHD  60
RCDAVRTISY EAQSRLHDPI YGCVSQIFSL QQKVVSLQAQ VVLLREEASR KFPQGDCSEQ  120
GKFLVQDTPQ DLHSWFHQVV SDSKLNQMSD VASTFMDRDE SLCSSNEFIY YQEVMFPWSV  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-3731017104LOB family transfactor Ramosa2.1
5ly0_B6e-3731017104LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085675001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738501e-142AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013675540.11e-132LOB domain-containing protein 14
SwissprotQ9SJW51e-100LBD14_ARATH; LOB domain-containing protein 14
TrEMBLA0A078FLR11e-131A0A078FLR1_BRANA; BnaC04g42480D protein
STRINGBra021737.1-P1e-114(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31310.11e-102LOB domain-containing protein 14
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Jeon E, et al.
    LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis.
    Plant Cell Physiol., 2017. 58(12): p. 2190-2201
    [PMID:29040694]