PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00085685001

Common Name

GSBRNA2T00085685001, LOC106380480

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

DBB

Protein Properties

Length: 243aa MW: 27007.3 Da PI: 4.4865

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00085685001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.1	7.4e-08	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +e+ +++l C +++ lC++C +e H H+ GSBRNA2T00085685001 4 QCDVCEKAPATLICCSDEAALCASCDVEVHAAnklaskHQ 43 7*****************************6556666665 PP
2	zf-B_box	27.2	8.3e-09	55	86	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 + C+ + ek + +fC +++ llC+dC +++H GSBRNA2T00085685001 55 PPCDICLEKAAFIFCVEDRALLCRDCDEATHA 86 68*****************************4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.499	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	8.13E-7	3	47	No hit	No description
SMART	SM00336	1.8E-9	4	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.0E-6	4	44	IPR000315	B-box-type zinc finger
SMART	SM00336	5.9E-14	52	99	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.343	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.0E-6	55	95	IPR000315	B-box-type zinc finger
CDD	cd00021	7.21E-7	55	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MKIQCDVCEK APATLICCSD EAALCASCDV EVHAANKLAS KHQRLFLDSL STKFPPCDIC 60 LEKAAFIFCV EDRALLCRDC DEATHAPNTR SANHQRFLAT GIRVALSSTS CSQEVEMNHF 120 DPPNQQILSK PTIQQSAAPS PPWAGDEFFR YSDLECSNKQ KEPLDLGELD WLAEMGFFGD 180 QPDQEALPAA EVPELSVSHL PHVHSYNRPM KSNVSNKKPR LEIRYDDDDD DDEQHFLVPD 240 IG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.8481	1e-142	seed\| vegetative meristem

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:23624715}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00085685001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352961	0.0	AK352961.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-E05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013675705.1	1e-180	B-box zinc finger protein 25 isoform X1
Swissprot	Q9SID1	1e-154	BBX25_ARATH; B-box zinc finger protein 25
TrEMBL	A0A078FR99	1e-179	A0A078FR99_BRANA; BnaC04g42410D protein
STRING	Bra021734.1-P	1e-170	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2711	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31380.1	1e-155	salt tolerance homologue

Link Out ? help Back to Top
Entrez Gene	106380480

Publications ? help Back to Top
Gangappa SN,Holm M,Botto JF Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development. Plant Signal Behav, 2014. [PMID:23733077] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Zhang X,Lin R Light signaling differentially regulates the expression of group IV of the B-box zinc finger family. Plant Signal Behav, 2017. 12(9): p. e1365213 [PMID:28922622]