PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00085715001

Common Name

GSBRNA2T00085715001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 678aa MW: 74478 Da PI: 6.2262

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00085715001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.1	0.00036	514	562	13	40
HHHHHHHHHHHHCTSCCC........................TTS-STC CS HLH 13 RdriNsafeeLrellPkas.....................kapskKlsK 40 R+ i +++ eLrel+P+ s ++ KlsK GSBRNA2T00085715001 514 RQLIQDRIKELRELVPNGSkcsidsllertikhmlflqnvTKHADKLSK 562 67799************53355555555555555555555555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.3E-29	6	162	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	9.27E-4	496	552	No hit	No description
PROSITE profile	PS50888	11.28	501	550	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-4	514	563	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-5	514	556	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence Send to blast
MGSTSQEILR SLCSNTEWRY AVFWKLNHRS RMVLTLEDAY YDNHGHNNSP GVQGCGVIPK 60 DMHGAHDSLG LAVAKMAYHV YSLGEGIVGH VALSGGHQWV FPENYGNCHS AAEFHNVWES 120 QISAGVKTIL VVAVGPCGVV QLGSLLKVDE DVTLVNHIRH MFLALKDPMA DHAASLMQCN 180 MNNSLSLPKI PSECLHVEAN PYCSGEVGKA MDVEDMPYNT PSCLLMEKAA QVVQGSSCGS 240 YSSVTFGFPI DLIDAKHENQ VHPNLHQYMK NYVLNNTSSS ALATEAERLI SGQSYPGLDS 300 TFYDSSRTGK ESSYQNEVFQ LSENQGNRYR EETERMLEGK CEDALISSGY PFAGSELLEA 360 LGSGFKQTSR GGPEDLVKSE HGSTTRPTDD TSHSQLTFDP SPGPENLLDA VVANVCHSDG 420 NARDDILSSR SVHSLLTSMA EPSGQKMHNQ LPLAEVYTQQ NPSDICGAFS SIGFSSTCPS 480 SSSDQFQTSL EMMPKKIKKR AKPGESSRPR PRDRQLIQDR IKELRELVPN GSKCSIDSLL 540 ERTIKHMLFL QNVTKHADKL SKSATTKMQQ KETGTQGSSC AVEVGGHLQV CSIIVENLNK 600 QGMVLIEMLC EECSHFLEIA NVIRSLDLII LRGVTEAQGE KTWICFVVES QNNKVMQRMD 660 ILWSLVQIFQ PKANGKH*

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence Send to blast

MGSTSQEILR SLCSNTEWRY AVFWKLNHRS RMVLTLEDAY YDNHGHNNSP GVQGCGVIPK  60
DMHGAHDSLG LAVAKMAYHV YSLGEGIVGH VALSGGHQWV FPENYGNCHS AAEFHNVWES  120
QISAGVKTIL VVAVGPCGVV QLGSLLKVDE DVTLVNHIRH MFLALKDPMA DHAASLMQCN  180
MNNSLSLPKI PSECLHVEAN PYCSGEVGKA MDVEDMPYNT PSCLLMEKAA QVVQGSSCGS  240
YSSVTFGFPI DLIDAKHENQ VHPNLHQYMK NYVLNNTSSS ALATEAERLI SGQSYPGLDS  300
TFYDSSRTGK ESSYQNEVFQ LSENQGNRYR EETERMLEGK CEDALISSGY PFAGSELLEA  360
LGSGFKQTSR GGPEDLVKSE HGSTTRPTDD TSHSQLTFDP SPGPENLLDA VVANVCHSDG  420
NARDDILSSR SVHSLLTSMA EPSGQKMHNQ LPLAEVYTQQ NPSDICGAFS SIGFSSTCPS  480
SSSDQFQTSL EMMPKKIKKR AKPGESSRPR PRDRQLIQDR IKELRELVPN GSKCSIDSLL  540
ERTIKHMLFL QNVTKHADKL SKSATTKMQQ KETGTQGSSC AVEVGGHLQV CSIIVENLNK  600
QGMVLIEMLC EECSHFLEIA NVIRSLDLII LRGVTEAQGE KTWICFVVES QNNKVMQRMD  660
ILWSLVQIFQ PKANGKH*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00085715001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352985	0.0	AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013687477.1	0.0	transcription factor bHLH155-like
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	A0A078FQF8	0.0	A0A078FQF8_BRANA; BnaC04g42170D protein
STRING	Bo4g176150.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]