PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085729001
Common NameGSBRNA2T00085729001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 449aa    MW: 50564.7 Da    PI: 5.6281
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085729001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11241282854
                          HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           Er RR + N++f+ L+ l+P++     +K + a+i+ +A++YIk+L
  GSBRNA2T00085729001 241 TERERRVHFNDRFFDLKNLIPNP-----TKSDRASIVGEAIDYIKEL 282
                          59*********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-13225295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.126233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-9239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8241282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-11241294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.32E-11242287No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEEERGSIYE EMPCFDANTP ASVTAESSFS QVQPPQILVA GSTSNSNCSL DVEEFHLSPQ  60
DCPQASSTPL QFHISPLPPP PRDNTQFNLI HQMSHNQQQQ QHSNWGNGYQ DFNNMCPNST  120
TTPDLLSLLH LPRCSLPLPN SSISFSDIMS SSSAAAVMYD PLFHLNFPLQ SRDNNQLPNG  180
SCLLGVEEQI QMDANGGGIN MMYYEPEHNN NTGFESGAFE FGNGGNNRRG RGSGKSRTFP  240
TERERRVHFN DRFFDLKNLI PNPTKSDRAS IVGEAIDYIK ELLRTIEEFK MLVEKKKFGK  300
FRSKKKPKTC GEEDLEQEQE GDNVSYRPQS EVDQSCFNMK NKNKSLRCSW LKRKSKVTEV  360
DVRIIDDEVT IKVVQKKKIN CLLFTTKVLD QLKLDLHHVA GGQIGEHYSF LFNTKICEES  420
CVYASGIADT VMEVVEKQYM EAVPTNGY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.254370.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085729001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634648.10.0PREDICTED: transcription factor bHLH10
SwissprotQ84TK10.0BH010_ARATH; Transcription factor bHLH10
TrEMBLA0A078FSY80.0A0A078FSY8_BRANA; BnaC04g42050D protein
TrEMBLA0A0D3C3D50.0A0A0D3C3D5_BRAOL; Uncharacterized protein
STRINGBo4g176070.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.11e-174bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]