PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00085730001

Common Name

GSBRNA2T00085730001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 446aa MW: 50437.9 Da PI: 4.5683

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00085730001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	8.3e-11	229	272	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR ++N+++e L+ l+P++ K + a+iL+ ++YI++L GSBRNA2T00085730001 229 FTTERERRCHLNERYEALKLLIPNP-----SKGDRASILQDGIDYINEL 272 578*******************9.....79************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.14E-11	221	277	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.1E-11	221	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-13	223	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.056	223	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-8	227	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-9	229	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MYEDSSCFDP NPTLEATVDN NGGYYDSTTA TEIDFTVRQQ FQPLVMIAGS TTNTFSDDLK 60 LPTMDEFSVF PSVVSSETQN QISNDNNHLI QQMIHDSNWA ASVDNYGFFM NPSDQNTTIT 120 PTPDLLSLLH LPKSSVPLPS SNLSDIMSGS CISYDPLFHL NLPPQPPLIL TADDYSGFFL 180 GTDTNITNTQ RDQQNLGDEN NNDQFDSGII EFSKNIRRKR RGKQKNKPFT TERERRCHLN 240 ERYEALKLLI PNPSKGDRAS ILQDGIDYIN ELRRRVSELK FLVERKRCGG RHKDNNEVDN 300 SNNNNLDDLN IVNDEDDEDD DDENMDKKTE SDVIDQCSSN NTLRCSWLQR KSKLTEVDVR 360 IVDDEVTIKV VQKRKINCLL VVTKVIDHLH LDLHHVSGGQ IGEHYSFLLN TKINEGSTIY 420 ASAIANKVIE VVDQHNMAAL PINNY*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MYEDSSCFDP NPTLEATVDN NGGYYDSTTA TEIDFTVRQQ FQPLVMIAGS TTNTFSDDLK  60
LPTMDEFSVF PSVVSSETQN QISNDNNHLI QQMIHDSNWA ASVDNYGFFM NPSDQNTTIT  120
PTPDLLSLLH LPKSSVPLPS SNLSDIMSGS CISYDPLFHL NLPPQPPLIL TADDYSGFFL  180
GTDTNITNTQ RDQQNLGDEN NNDQFDSGII EFSKNIRRKR RGKQKNKPFT TERERRCHLN  240
ERYEALKLLI PNPSKGDRAS ILQDGIDYIN ELRRRVSELK FLVERKRCGG RHKDNNEVDN  300
SNNNNLDDLN IVNDEDDEDD DDENMDKKTE SDVIDQCSSN NTLRCSWLQR KSKLTEVDVR  360
IVDDEVTIKV VQKRKINCLL VVTKVIDHLH LDLHHVSGGQ IGEHYSFLLN TKINEGSTIY  420
ASAIANKVIE VVDQHNMAAL PINNY*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00085730001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141140.1	0.0	PREDICTED: transcription factor bHLH91-like
Swissprot	Q8GX46	0.0	BH091_ARATH; Transcription factor bHLH91
TrEMBL	A0A078FRA3	0.0	A0A078FRA3_BRANA; BnaC04g42040D protein
STRING	Bra021710.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]