PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00085882001

Common Name

GSBRNA2T00085882001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 372aa MW: 43132.3 Da PI: 5.6805

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00085882001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	94.1	1.5e-29	58	171	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............XTTSE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............kekiw 79 Fl+k+y+++ed+++++++sws+ +nsf+v+d+e f+ ++Lp +Fkh+n++SFvRQLn+Y +++++ k s+ +++ w GSBRNA2T00085882001 58 FLTKTYDLVEDSRTNHVVSWSQANNSFIVWDQEYFSMTLLPIFFKHNNLSSFVRQLNTYVSTNLNTYVKLSRFyytlhplgfrkvNPDRW 147 9********************************************************9888888776644488888888776559* PP EEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 80 eFkhksFkkgkkellekikrkkse 103 eF+++ F +g+k+ll++i+r+k++ GSBRNA2T00085882001 148 EFANEGFLRGQKHLLKTIRRRKTN 171 *********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	3.13E-29	53	168	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.8E-46	54	168	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.1E-33	54	168	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.0E-13	58	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.8E-26	58	168	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.0E-13	96	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.0E-13	109	121	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MDPPYRFIKE EFPTGFNDSP SPPSSNLYTT SMAPNDPTTT LSSPQPIEGL HESGPPPFLT 60 KTYDLVEDSR TNHVVSWSQA NNSFIVWDQE YFSMTLLPIF FKHNNLSSFV RQLNTYVSTN 120 LNTYVKLSRF YYTLHPLGFR KVNPDRWEFA NEGFLRGQKH LLKTIRRRKT NNCCIEVGRR 180 DKQVLMMELV KVRQQQQSTK MDLTLLEDKL KKTESKQKQM MRFLARAMQN PDFLQQLIEQ 240 KEKSKDTEEA IDKKRQRPID QGKRHDAGSS SAFFDMKQET YGDMSELDRL AMHIQGLGDQ 300 CNKKDVVLDV GKGNEEQQHK ERYQDENNEI YGEGFWEDLL NEGQNFDLQG DDEENVDVLI 360 EQLGYLGSSG H*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MDPPYRFIKE EFPTGFNDSP SPPSSNLYTT SMAPNDPTTT LSSPQPIEGL HESGPPPFLT  60
KTYDLVEDSR TNHVVSWSQA NNSFIVWDQE YFSMTLLPIF FKHNNLSSFV RQLNTYVSTN  120
LNTYVKLSRF YYTLHPLGFR KVNPDRWEFA NEGFLRGQKH LLKTIRRRKT NNCCIEVGRR  180
DKQVLMMELV KVRQQQQSTK MDLTLLEDKL KKTESKQKQM MRFLARAMQN PDFLQQLIEQ  240
KEKSKDTEEA IDKKRQRPID QGKRHDAGSS SAFFDMKQET YGDMSELDRL AMHIQGLGDQ  300
CNKKDVVLDV GKGNEEQQHK ERYQDENNEI YGEGFWEDLL NEGQNFDLQG DDEENVDVLI  360
EQLGYLGSSG H*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-20	49	170	17	131	Heat shock factor protein 1
5d5v_B	3e-20	49	170	17	131	Heat shock factor protein 1
5d5v_D	3e-20	49	170	17	131	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00085882001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB608500	1e-101	AB608500.1 Raphanus sativus DNA, microsatellite locus RsSH049, cultivar: rat-tail radish.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013659773.1	0.0	heat stress transcription factor A-6b-like
Swissprot	Q9LUH8	1e-175	HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBL	A0A078I950	0.0	A0A078I950_BRANA; BnaCnng14290D protein
STRING	Bo1g103760.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1256	28	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-165	heat shock transcription factor A6B

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]