PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00085942001
Common NameGSBRNA2T00085942001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 283aa    MW: 32359.5 Da    PI: 6.6521
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00085942001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.56.7e-15114165155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P +   ++++ + a+i+  A++Y+k+L+
  GSBRNA2T00085942001 114 QRMTHIAVERNRRKQMNEYLAVLRSLMPLS---YAQRGDQASIVGGAINYVKKLE 165
                          79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-13112167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.74E-13112169No hitNo description
PROSITE profilePS5088816.171113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-17113177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-12114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-10119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MPLEAVVNPQ DPVGYLSNCK DFMFHDFYYQ EEIVSQDTKN NIDTLGHEQR FVENDKEEER  60
QWGDHHHHQC PVVPSLEEEL GLPAIDVENP PPVQQRRKKR RTRSNKNKEE IENQRMTHIA  120
VERNRRKQMN EYLAVLRSLM PLSYAQRGDQ ASIVGGAINY VKKLEHILQS MEPRRTTTTS  180
HEADTSTSSL VCTFSDVFTF PQYSKNSLSE VESSSSPAEI EVTVAEGHAN VKIMAKKKPR  240
QLLKLVASIQ SLRLSLLHLN VTTLDNLILY SISVKNNHEI LE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100QRRKKRR
296102RKKRRTR
3114125RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00085942001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013654097.20.0transcription factor bHLH94-like
SwissprotQ9SK911e-140BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A078I9810.0A0A078I981_BRANA; BnaA07g10440D protein
STRINGBra012329.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-124bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]