PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00086031001
Common NameGSBRNA2T00086031001, LOC106407664
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 265aa    MW: 30387 Da    PI: 4.5291
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00086031001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-125799754
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           Er+RR+++N++++ Lr+++P+      +Kl+Ka+i++  ++Y+++L
  GSBRNA2T00086031001 57 VSERNRRQKLNQRLFALRSVVPNI-----TKLDKASIVKDSIDYMQKL 99
                         57*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1965099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-105399No hitNo description
SuperFamilySSF474593.53E-1654117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1656116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1356105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-105799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEDLEDEYKN YWETTMFFQN QELEFDSWPL EEAFSGSGDS SSPDGAATSP ASSKNVVSER  60
NRRQKLNQRL FALRSVVPNI TKLDKASIVK DSIDYMQKLI DQEKRLEAEI QELESRSILV  120
ENPTRDYECI NNFLENQQQD LSDNNVTRSK KFRQMDYNTS GSSSVARVHN QSLIEVLEMK  180
VTWMGERTVV VCITCSKRRE TMLQLCKVLE SLNLNIVTTN FSSFSTRLST TLFLQADEEE  240
RSTLETKIQT AIAAYNDPSC FINF*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00086031001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304821e-132AJ630482.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At4g29930.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597451.10.0PREDICTED: transcription factor bHLH27
RefseqXP_013703989.10.0transcription factor bHLH27
SwissprotQ700E31e-137BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A078IBJ40.0A0A078IBJ4_BRANA; BnaC07g42240D protein
TrEMBLA0A3P6ETD10.0A0A3P6ETD1_BRAOL; Uncharacterized protein
STRINGBo7g114110.11e-172(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-126bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]