PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00086223001

Common Name

GSBRNA2T00086223001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 235aa MW: 26035.1 Da PI: 4.311

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00086223001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.3	0.00063	187	227	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 E+ R d+i +a+ L +++P a K + L +A++Y+k L GSBRNA2T00086223001 187 EQSRKDKIQTALKILESIVPGA------KgNQALLLLDEAIDYLKLL 227 999******************9......5356667899999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.502	178	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-5	187	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.64E-6	187	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MPLDTRQWDV PPKACFEDMA ARFPPDAAEL QAHCLQPPPF KWSLDKESCG KGFSLSDMRS 60 WCAAAATTTT PHGGAQKGLM ILDQSGNQTR LLQCPFPLTA EPVKLSEEFD ENYGKESEMH 120 EDTEEINALL YSDDEDCESD NEVMSTGHSP YQQVCNKRVS EEIDGPCKRQ KLLDISQEDT 180 GSGLSDEQSR KDKIQTALKI LESIVPGAKG NQALLLLDEA IDYLKLLKQD LNHC*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, and flowers. {ECO:0000269\|PubMed:16936072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Involved in stem elongation, probably by regulating a subset of genes involved in this process. {ECO:0000269\|PubMed:16936072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00086223001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189207	0.0	AC189207.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB007I19, complete sequence.
GenBank	AC232526	0.0	AC232526.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB083J11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013615111.1	1e-150	PREDICTED: transcription factor SAC51-like
Swissprot	Q9FMF4	9e-87	SAC51_ARATH; Transcription factor SAC51
TrEMBL	A0A078IBR3	1e-173	A0A078IBR3_BRANA; BnaC02g43020D protein
STRING	Bra031922.1-P	1e-149	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5546	10	14

Publications ? help Back to Top
Imai A, et al. The dwarf phenotype of the Arabidopsis acl5 mutant is suppressed by a mutation in an upstream ORF of a bHLH gene. Development, 2006. 133(18): p. 3575-85 [PMID:16936072] Imai A,Komura M,Kawano E,Kuwashiro Y,Takahashi T A semi-dominant mutation in the ribosomal protein L10 gene suppresses the dwarf phenotype of the acl5 mutant in Arabidopsis thaliana. Plant J., 2008. 56(6): p. 881-90 [PMID:18694459] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]