PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00086429001

Common Name

GSBRNA2T00086429001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 231aa MW: 24811.1 Da PI: 11.1222

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00086429001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.4	7.4e-40	34	190	3	118
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 +kk + +++hTkv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++ ss+s ++++ GSBRNA2T00086429001 34 VKKAPAKDRHTKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStTSTCTISSSSLDHKPllg 123 79*************************************************************999997775222223333322333556 PP TCP 89 ......................................kaaksaa.kskksqksaasalnlakesraka 118 + a+ ++ ++++q++aa ++ +++r+++ GSBRNA2T00086429001 124 sspfilgkrvregsrgaipagswsvparpefgqvlsfaAGAPHEMfLQQHQQQQAA--AHFVHQQRQQQ 190 78888888888999999999999999999999999987444444435555555555..55555555443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-33	39	186	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.59	39	93	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MFNTTNGVMI SNGDILERQR QKQQQQPSEG ALVVKKAPAK DRHTKVDGRG RRIRMPIICA 60 ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ASFSTTSTCT ISSSSLDHKP 120 LLGSSPFILG KRVREGSRGA IPAGSWSVPA RPEFGQVLSF AAGAPHEMFL QQHQQQQAAA 180 HFVHQQRQQQ GAIGEASAAR VGNYLPGHLN LLASLSAGAP GSGRREYCPR *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00086429001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018436782.1	1e-126	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	7e-96	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A078IAS8	1e-168	A0A078IAS8_BRANA; BnaA02g32950D protein
STRING	Bo2g160970.1	1e-123	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-76	TCP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]