PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00086777001
Common NameGSBRNA2T00086777001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 344aa    MW: 38628.8 Da    PI: 10.1299
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00086777001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30277335360
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                          D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe eH h+k
  GSBRNA2T00086777001 277 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCLEDPAMLIVTYEAEHSHPK 335
                          99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.5E-17230273IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-32263335IPR003657WRKY domain
PROSITE profilePS5081129.792270336IPR003657WRKY domain
SuperFamilySSF1182903.14E-26273335IPR003657WRKY domain
SMARTSM007741.6E-36275335IPR003657WRKY domain
PfamPF031065.7E-26277334IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEEIEGANRA AVDSSHRVLN LLCTPHQQDQ EYNNVSLLSE TREAVFRFKR VSSLLSTTSV  60
GHARFRRAKE PQTHLSQSIF LDPVHQRTEP PPSQTAPVMM LRSGLHELST DSPTLGTRSF  120
SLNSDAKAKA PLLQLNQSIH QNMFPEHQQL HERLEAHRHQ MQKQQKHQGE IMLRKCNGGI  180
SLSFDNSSCT QTMSSTRSFV SSLSIDGSVA NLEGRNSFQL VGAPSSTDQS SQHSKRKCLM  240
KCGSSSRCHC SKKRKHRVRR SIRVPAISNK VADIPPDDYS WRKYGQKPIK GSPYPRGYYK  300
CSSMRGCPAR KHVERCLEDP AMLIVTYEAE HSHPKLPSQA MTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20263338276WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234254KRKCLMKCGSSSRCHCSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00086777001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9123940.0EU912394.1 Brassica napus WRKY21-1 transcription factor (WRKY21-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013708313.10.0probable WRKY transcription factor 21
SwissprotO043361e-165WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A078I8920.0A0A078I892_BRANA; BnaC04g13870D protein
STRINGBo4g056260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-148WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]