PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00086943001
Common NameGSBRNA2T00086943001, LOC106429095
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 237aa    MW: 26831.4 Da    PI: 9.9164
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00086943001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.9e-11853248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         g W   Ede l+ a  ++G+++W +I++    ++++kqck rw+ +l
  GSBRNA2T00086943001  8 GVWKNTEDEVLKAAMMKYGKNQWGRISSLSV-RKSAKQCKARWNEWL 53
                         78*****************************.************986 PP
2Myb_DNA-binding37.17.3e-1260103248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            WT eEde+l+++ k l++  W+tIa  +g  Rt+ qc +r+ k+l
  GSBRNA2T00086943001  60 TEWTVEEDEKLLHLAKILPTQ-WRTIAPAVG--RTPSQCLERYEKLL 103
                          68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.342253IPR017930Myb domain
SMARTSM007173.1E-11655IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-17961IPR009057Homeodomain-like
PfamPF139211.3E-111070No hitNo description
CDDcd001677.57E-91053No hitNo description
SuperFamilySSF466893.29E-2033104IPR009057Homeodomain-like
PROSITE profilePS5129421.13454107IPR017930Myb domain
CDDcd116594.05E-3055104No hitNo description
SMARTSM007171.6E-1258105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-1462104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MRNMVKGGVW KNTEDEVLKA AMMKYGKNQW GRISSLSVRK SAKQCKARWN EWLDPSIKKT  60
EWTVEEDEKL LHLAKILPTQ WRTIAPAVGR TPSQCLERYE KLLDASSCGK GYEAGGDPRK  120
LRPGEIDPNP ESKPARPDPV DMEDDEMEML SEARARLANT RGKKAKRKAR DKQIQEARSL  180
ASLQKRRELK AAGIDDGKHR NRKGKGIDYS AEIAFEKRAP AGFYDTADED RHADDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-10922353236Cell division cycle 5-like protein
5xjc_L1e-10922353236Cell division cycle 5-like protein
5yzg_L1e-10922353236Cell division cycle 5-like protein
5z56_L1e-10922353236Cell division cycle 5-like protein
5z57_L1e-10922353236Cell division cycle 5-like protein
5z58_L1e-10922353236Cell division cycle 5-like protein
6ff4_L1e-10922353236Cell division cycle 5-like protein
6ff7_L1e-10922353236Cell division cycle 5-like protein
6icz_L1e-10922353236Cell division cycle 5-like protein
6id0_L1e-10922353236Cell division cycle 5-like protein
6id1_L1e-10922353236Cell division cycle 5-like protein
6qdv_O1e-10922353236Cell division cycle 5-like protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00086943001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013725291.11e-174cell division cycle 5-like protein
SwissprotP929481e-130CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A078IAN91e-172A0A078IAN9_BRANA; BnaC09g14760D protein
TrEMBLA0A3P6DQH61e-172A0A3P6DQH6_BRAOL; Uncharacterized protein
STRINGBo9g044140.11e-171(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16532913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-126cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]