PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00086998001
Common NameGSBRNA2T00086998001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 252aa    MW: 28434.1 Da    PI: 8.4725
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00086998001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.5e-141462148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                         rg+W++eEd++lv ++ ++G g+W+ ++++ g + R++k+c++r ++yl
  GSBRNA2T00086998001 14 RGKWSEEEDQKLVAYIDEYGIGDWRFVPHRTGsLLRCGKSCRLRRLNYL 62
                         89******************************************99997 PP
2Myb_DNA-binding45.81.4e-1468112147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +g+ T+ E++ +v+ +  +G++ W+ Ia++m+ gR+++++k++w++ 
  GSBRNA2T00086998001  68 KGKLTPREEQDIVNFHSVFGNR-WAVIAQYMP-GRSDNNIKNHWNSC 112
                          6889******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.964962IPR017930Myb domain
SuperFamilySSF466892.86E-2512109IPR009057Homeodomain-like
SMARTSM007171.4E-101364IPR001005SANT/Myb domain
PfamPF002493.8E-121462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-171569IPR009057Homeodomain-like
CDDcd001677.18E-81662No hitNo description
PROSITE profilePS5129422.30463117IPR017930Myb domain
SMARTSM007171.0E-1167115IPR001005SANT/Myb domain
PfamPF002493.7E-1368112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2170118IPR009057Homeodomain-like
CDDcd001679.90E-872110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGGATWFEAD GTKRGKWSEE EDQKLVAYID EYGIGDWRFV PHRTGSLLRC GKSCRLRRLN  60
YLRPEVKKGK LTPREEQDIV NFHSVFGNRW AVIAQYMPGR SDNNIKNHWN SCLKKRLKRN  120
GIDPMTHQPI INLAVKTPSF NTDCGSSSSL TASPSSSSSS LSGSARLLNK IATSISSRQQ  180
GVERIKDIMS DPRITCINGQ AKELEESKKD HGKILASSDD QEDDFLMWDE EKVRRFMEEI  240
GVMDLETNGV Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00086998001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603850.11e-168PREDICTED: transcription factor MYB122-like
TrEMBLA0A078JRC10.0A0A078JRC1_BRANA; BnaCnng63050D protein
STRINGBo8g091080.11e-167(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.13e-76myb domain protein 47
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]