PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00087136001

Common Name

GSBRNA2T00087136001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 246aa MW: 27719.4 Da PI: 9.5752

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00087136001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	125.9	3.3e-39	6	135	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 p+GfrF Pt+ el+++yL+ +++g + ++++ i+ +d+++veP +Lp+ +++++ ++w fF++r++++a+g r++r+t gyWkatg GSBRNA2T00087136001 6 PVGFRFYPTEVELISFYLRFQLNGGNATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWLFFVPRQEREARGGRPSRTTGLGYWKATG 95 89*************************999**********9656766667888*************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 + +v+s +++++g+kkt+vfy g+ap+g+kt+W m+ey+ GSBRNA2T00087136001 96 SPGPVFSPDNRVIGVKKTMVFYIGKAPTGRKTKWKMNEYK 135 *************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-43	3	161	IPR003441	NAC domain
PROSITE profile	PS51005	45.253	5	161	IPR003441	NAC domain
Pfam	PF02365	3.1E-19	6	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MEHEIPVGFR FYPTEVELIS FYLRFQLNGG NATIHSLIPI LDVFSVEPTQ LPNLAGERCR 60 GDAEQWLFFV PRQEREARGG RPSRTTGLGY WKATGSPGPV FSPDNRVIGV KKTMVFYIGK 120 APTGRKTKWK MNEYKGIDET ASVSTIPKLR HEFSVCRIYI KSGSSRAFDR RPTEVYAIER 180 KLPRFGIETS SRATATRRTS EMETSNSGGG DQVQLPVNAS TTQTISEMVD GLSQPFWEWE 240 QLNWS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-32	5	166	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-32	5	166	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-32	5	166	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-32	5	166	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	8e-32	5	166	20	173	NAC domain-containing protein 19
3swm_B	8e-32	5	166	20	173	NAC domain-containing protein 19
3swm_C	8e-32	5	166	20	173	NAC domain-containing protein 19
3swm_D	8e-32	5	166	20	173	NAC domain-containing protein 19
3swp_A	8e-32	5	166	20	173	NAC domain-containing protein 19
3swp_B	8e-32	5	166	20	173	NAC domain-containing protein 19
3swp_C	8e-32	5	166	20	173	NAC domain-containing protein 19
3swp_D	8e-32	5	166	20	173	NAC domain-containing protein 19
4dul_A	8e-32	5	166	17	170	NAC domain-containing protein 19
4dul_B	8e-32	5	166	17	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00087136001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL138641	1e-88	AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7.
GenBank	CP002686	1e-88	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009150295.1	1e-177	PREDICTED: putative NAC domain-containing protein 61
Swissprot	Q9M290	1e-134	NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBL	A0A078I8Q6	0.0	A0A078I8Q6_BRANA; BnaA06g39010D protein
STRING	Bra019442.1-P	1e-176	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	1e-142	NAC domain containing protein 61

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]