PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00087217001

Common Name

GSBRNA2T00087217001, LOC106407808, LOC106434481

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GRAS

Protein Properties

Length: 638aa MW: 71564.4 Da PI: 7.2077

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00087217001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	418.8	4.8e-128	255	629	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 lv+lL+ c ea+++++ +++++l+ar elasp+g +pm+Rl++y+teALa r++r++++++++ pp+e +++ e a +++++++P GSBRNA2T00087217001 255 LVNLLTGCLEAIRTRNIAAINHLIARTGELASPRGtTPMTRLISYYTEALALRVSRMWPHIFHIAPPREFERT--LEDDDAWRFLNQATP 342 6899*****************************99*****************************964..44446999*** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179 i+kf h taN+++l+a+eg ervHiiDfdi+qGlQWp+++q+LasR+++p ++RiTgvg+ sk el+etg+rL+ fAe++++pfef+ GSBRNA2T00087217001 343 IPKFIHYTANEMLLRAFEGRERVHIIDFDIKQGLQWPSFFQSLASRSNPPRHVRITGVGE----SKLELNETGDRLHGFAEAMNLPFEFH 428 ********************************************************....************************ PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 + v++rled++l++L+vk+gEa+aVn+ +q+h++l ++++ + ++++ lv+s++P vv++eqea+h+s+++ +r++++l+yysa+fd GSBRNA2T00087217001 429 P-VVDRLEDVRLWMLHVKEGEAVAVNCLMQMHKTLYDDGTGGAAFRNFVGLVRSTNPVAVVIAEQEAEHDSAQLETRVCNSLKYYSAVFD 517 .7************************************************************************************ PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdg.yrveee.. 354 +++ l ++s r+k+E++l+grei+n+vaceg++r+ rh +++Wr+++e+ GF+++ +se+++ q k+llr+++ ++g ++ve + GSBRNA2T00087217001 518 VMHTHLRADSLMRVKIEEVLFGREIRNIVACEGSHRQGRHVGFGQWRRMMEQLGFRSLGVSEREVLQSKMLLRMYGdgDEGfFNVERSae 607 ***********************************************************************974455999995455 PP GRAS 355 ...sgslvlgWkdrpLvsvSaW 373 g ++l W ++pL+++SaW GSBRNA2T00087217001 608 dgdGGGVTLRWLEQPLYTISAW 629 56466777************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.649	229	602	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-125	255	629	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence Send to blast
MLAGCSSSSL LSPTRRLRSE AVAATVSVHF PMNTQRLDLP CSSSFSRKEP IERKSGGCSL 60 KQSIKLPPLA TTRGNTEGFS WNNDNNIVKK KKKSLKRFAE ENKEDKSCLS RVKRQRGGDD 120 DHNRGFWFEH LTTQNSSQAL PFSLTCSGDD YEEKVWFAPS EVISQPLQSN NPNWANSVIT 180 TELAGLGDKD IDSSSRPAAV KEASGSSTSA SSDSRHRVPE PTNGSRNQYS HGGGNTEERT 240 INNNHMNDSQ RDFELVNLLT GCLEAIRTRN IAAINHLIAR TGELASPRGT TPMTRLISYY 300 TEALALRVSR MWPHIFHIAP PREFERTLED DDAWRFLNQA TPIPKFIHYT ANEMLLRAFE 360 GRERVHIIDF DIKQGLQWPS FFQSLASRSN PPRHVRITGV GESKLELNET GDRLHGFAEA 420 MNLPFEFHPV VDRLEDVRLW MLHVKEGEAV AVNCLMQMHK TLYDDGTGGA AFRNFVGLVR 480 STNPVAVVIA EQEAEHDSAQ LETRVCNSLK YYSAVFDVMH THLRADSLMR VKIEEVLFGR 540 EIRNIVACEG SHRQGRHVGF GQWRRMMEQL GFRSLGVSER EVLQSKMLLR MYGDGDEGFF 600 NVERSAEDGD GGGVTLRWLE QPLYTISAWG IGGSSSF*

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence Send to blast

MLAGCSSSSL LSPTRRLRSE AVAATVSVHF PMNTQRLDLP CSSSFSRKEP IERKSGGCSL  60
KQSIKLPPLA TTRGNTEGFS WNNDNNIVKK KKKSLKRFAE ENKEDKSCLS RVKRQRGGDD  120
DHNRGFWFEH LTTQNSSQAL PFSLTCSGDD YEEKVWFAPS EVISQPLQSN NPNWANSVIT  180
TELAGLGDKD IDSSSRPAAV KEASGSSTSA SSDSRHRVPE PTNGSRNQYS HGGGNTEERT  240
INNNHMNDSQ RDFELVNLLT GCLEAIRTRN IAAINHLIAR TGELASPRGT TPMTRLISYY  300
TEALALRVSR MWPHIFHIAP PREFERTLED DDAWRFLNQA TPIPKFIHYT ANEMLLRAFE  360
GRERVHIIDF DIKQGLQWPS FFQSLASRSN PPRHVRITGV GESKLELNET GDRLHGFAEA  420
MNLPFEFHPV VDRLEDVRLW MLHVKEGEAV AVNCLMQMHK TLYDDGTGGA AFRNFVGLVR  480
STNPVAVVIA EQEAEHDSAQ LETRVCNSLK YYSAVFDVMH THLRADSLMR VKIEEVLFGR  540
EIRNIVACEG SHRQGRHVGF GQWRRMMEQL GFRSLGVSER EVLQSKMLLR MYGDGDEGFF  600
NVERSAEDGD GGGVTLRWLE QPLYTISAWG IGGSSSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-63	262	629	26	378	Protein SCARECROW
5b3h_A	1e-63	262	629	25	377	Protein SCARECROW
5b3h_D	1e-63	262	629	25	377	Protein SCARECROW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.22574	0.0	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00087217001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189437	0.0	AC189437.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069A23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013608699.1	0.0	PREDICTED: scarecrow-like protein 28
Refseq	XP_013704123.1	0.0	scarecrow-like protein 28
Refseq	XP_013730810.1	0.0	scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A078IB14	0.0	A0A078IB14_BRANA; BnaCnng14890D protein
TrEMBL	A0A0D3E3T9	0.0	A0A0D3E3T9_BRAOL; Uncharacterized protein
STRING	Bo9g028850.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7296	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein

Link Out ? help Back to Top
Entrez Gene	106407808 \| 106434481

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]