PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00087368001
Common NameGSBRNA2T00087368001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 215aa    MW: 23940.3 Da    PI: 10.4182
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00087368001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013426123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         +kC+ C+ksF +   L  H+++H
  GSBRNA2T00087368001  4 HKCKLCSKSFCNGRALGGHMKSH 26
                         79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.868436IPR007087Zinc finger, C2H2
PfamPF139126.8E-6426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MQKHKCKLCS KSFCNGRALG GHMKSHLVSS HTPTRKKLLG DSVYSSSSSS DGKTLAYGLR  60
ENPRKSCRVF NPDPESSTVY NSETETEPES VDPVRKRRRA DVSKKNKKKT RSKKRVFENS  120
SEPGKKQTKR SKSNSNESPE PASSVSDGSP EQDLAMCLMM LSRDSREVKL KKPIIKAEEI  180
KPEKRHVPEL RRCMLDLNLP PPQESDVVAV VSAI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19498RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00087368001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136798.11e-135PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A078JUY11e-152A0A078JUY1_BRANA; BnaA03g58060D protein
STRINGBra012701.1-P1e-134(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95101421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16610.14e-81C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]