PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00087424001

Common Name

GSBRNA2T00087424001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 232aa MW: 25391.8 Da PI: 5.7227

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00087424001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.3	1.2e-31	24	82	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+ GSBRNA2T00087424001 24 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 82 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.3E-32	17	84	IPR003657	WRKY domain
PROSITE profile	PS50811	33.361	18	84	IPR003657	WRKY domain
SuperFamily	SSF118290	3.79E-27	21	84	IPR003657	WRKY domain
SMART	SM00774	1.5E-38	23	83	IPR003657	WRKY domain
Pfam	PF03106	1.4E-26	25	82	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
GKKVVCIPAP AAINSRSSGE VVPSDLWAWR KYGQKPIKGS PYPRGYYRCS SSKGCPARKQ 60 VERSRTDPNM LVITYTSEHN HPWPTQRNAL AGSTRSSISS SSNPSSKSLT SIATATTSSS 120 SRVSQNKDEP NKSHLASSST PPSPYVAAAV KEEDVEERQN KMEFDNDPDN TYRPEFQHQP 180 EGFFADLDEL EEDSLTMLLS QGFSGGGNLE NKTTIPDVFS DFFDDDSSRS L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-26	2	85	6	80	Disease resistance protein RRS1
5w3x_D	2e-26	2	85	6	80	Disease resistance protein RRS1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.29109	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00087424001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ012167	0.0	FJ012167.1 Brassica napus WRKY35 transcription factor (WRKY35) mRNA, complete cds.
GenBank	KC246578	0.0	KC246578.1 Brassica napus WRKY transcription factor 35.1 (WRKY35.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009143736.1	1e-169	PREDICTED: probable WRKY transcription factor 35
Refseq	XP_022570538.1	1e-169	probable WRKY transcription factor 35
Swissprot	O64747	1e-112	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A078JV98	1e-170	A0A078JV98_BRANA; BnaAnng30430D protein (Fragment)
TrEMBL	A0A397ZHK1	1e-168	A0A397ZHK1_BRACM; Uncharacterized protein
TrEMBL	M4CMF0	1e-168	M4CMF0_BRARP; Uncharacterized protein
STRING	Bra005388.1-P	1e-169	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	9e-97	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]