PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00087538001
Common NameGSBRNA2T00087538001, LOC106360752, LOC106360753
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 280aa    MW: 32088.8 Da    PI: 8.8225
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00087538001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.44.3e-4781343128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                          pGfrFhPt+eel ++yLk+ v+gk  ++ evi  ++iy+++PwdLp   k +e+ewyfF++r++k+ +g r++r+t++gyWkatg+d+++
  GSBRNA2T00087538001   8 PGFRFHPTEEELTDYYLKNMVNGKFSKV-EVIGFLNIYRHDPWDLPLLSKIGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRKI 96 
                          9***********************9999.99***************8778899************************************* PP

                  NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +s    ++++glkktLvfy+grap g+ktdWvm+eyr+
  GSBRNA2T00087538001  97 ISLsePKRVIGLKKTLVFYRGRAPGGSKTDWVMNEYRM 134
                          987557778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.3196152IPR003441NAC domain
SuperFamilySSF1019413.01E-547152IPR003441NAC domain
PfamPF023651.2E-258134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSREIELPGF RFHPTEEELT DYYLKNMVNG KFSKVEVIGF LNIYRHDPWD LPLLSKIGER  60
EWYFFVPRER KHGNGGRPSR TTEKGYWKAT GSDRKIISLS EPKRVIGLKK TLVFYRGRAP  120
GGSKTDWVMN EYRMPDNCTL PKDVVLCKIY RKATSLKVLE QRAEMESKMT QTCPNSPLSS  180
SETISYVGKE ENLMTTSFPF PQASAMQEAN NNFMLQGHEE KQREAETKES SSSLKLPCGV  240
LPLPELQLPK QGLEWGQDQF LSISPWLQNL TPIVNLLNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-44815522171NAC domain-containing protein 19
3swm_B2e-44815522171NAC domain-containing protein 19
3swm_C2e-44815522171NAC domain-containing protein 19
3swm_D2e-44815522171NAC domain-containing protein 19
3swp_A2e-44815522171NAC domain-containing protein 19
3swp_B2e-44815522171NAC domain-containing protein 19
3swp_C2e-44815522171NAC domain-containing protein 19
3swp_D2e-44815522171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.264861e-128seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00087538001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533070.0AK353307.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-I17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013655860.10.0NAC domain-containing protein 35-like
RefseqXP_013655861.10.0NAC domain-containing protein 35-like
SwissprotQ10S651e-89NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A078I9720.0A0A078I972_BRANA; BnaA09g08940D protein
STRINGBra037283.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38992860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-170NAC domain containing protein 36
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]