PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00087898001
Common NameGSBRNA2T00087898001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 258aa    MW: 28380.8 Da    PI: 8.8772
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00087898001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-07186212430
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                          +h+ +Er RR++iN ++  L+el+P +
  GSBRNA2T00087898001 186 SHSLAERARREKINARMKLLQELVPGC 212
                          8************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-8180218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.05E-5180216No hitNo description
PROSITE profilePS508889.966182242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-8185214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-5186212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDLSGRFGAR SGNGVPFREV TGLESLHLGG GDEFRQMVLP ENGGGFTALL ELPPTRAVEL  60
LHSSSSSSSQ ATLHSVGTLT FPSNPILMER AARFSVIATE QNPNGNISGE TTTSSVPSNE  120
HIKTEPAETE TSDQAAVEKQ NNRCGKRKDF DKKVNSSTKK KSKSSEENEK LPYVHVRARR  180
GQATDSHSLA ERARREKINA RMKLLQELVP GCDKIHPKRD RFWWKDEDQS VLWGPSNCKL  240
SLEVGNMDVT LPSRQLI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00087898001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894691e-164AC189469.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB078G17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013686154.11e-153transcription factor bHLH60-like isoform X2
SwissprotQ3EAI18e-88BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A078I9P00.0A0A078I9P0_BRANA; BnaC04g24020D protein
STRINGBo4g109760.11e-177(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.27e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]