PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00087993001
Common NameGSBRNA2T00087993001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 426aa    MW: 47764.7 Da    PI: 5.8605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00087993001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.4e-10218259854
                          HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           Er RR + +++f  L+ l+P++     +K++ a+i+ +A+++Ik+L
  GSBRNA2T00087993001 218 TERERRVHFKDRFGDLKNLIPNP-----TKNDRASIVGEAIDHIKEL 259
                          7**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.51E-9208264No hitNo description
SuperFamilySSF474597.2E-12209276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-9210270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.643210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-6216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-7217259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MEGGNMFEEI GCFDPNAPAD MTVERNFSPA EPPPPVLVAG STSNSNCSLE DLSEFHLSPQ  60
DCSLAAATAS VHQLHINTPS CDHQLQTLMH QNFQDASYAP QSNNWDNGYQ DFVTLGPNHT  120
TPDLLSLLQL PRSSLPPFAT PTLHDMIMTS SSAASAAFDP LYHLNFPMQP PSGTLLGVED  180
QTEFNGVNSL IYAEENNNTE NGLNRKGRGS RKRKIFPTER ERRVHFKDRF GDLKNLIPNP  240
TKNDRASIVG EAIDHIKELL RTIEEFKMLL EKKRITRQRN KRGRIEIGEE DVGDENYNAQ  300
SEVVEQCLVN KKNSSLRCSW LKRKSKFTEV DVRIIDDEVT IKIVQKKKIN CLLFVSKVID  360
QLQLDLHHVA GAQIGEHHSF LFNTKICEGS SVYASAIADR VMEVLEKQYM EALSSNNGYH  420
CYTSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276281RQRNKR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00087993001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013665675.10.0transcription factor bHLH89-like
SwissprotQ9LND00.0BH089_ARATH; Transcription factor bHLH89
TrEMBLA0A078IC660.0A0A078IC66_BRANA; BnaA10g04110D protein
STRINGBo5g007310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.20.0bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]