PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00088016001
Common NameGSBRNA2T00088016001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family EIL
Protein Properties Length: 583aa    MW: 65873.8 Da    PI: 5.3669
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00088016001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3422.83.6e-129693951327
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                          e+l++rmwkd+++lkr+ker+k+  ++kea       +k+++qa+rkkmsraQDgiLkYMlk mevc+++GfvYgiipekgkpv+g+sd+
  GSBRNA2T00088016001  69 EDLERRMWKDRVRLKRIKERTKSGSQAKEA------PKKISDQAQRKKMSRAQDGILKYMLKLMEVCKVRGFVYGIIPEKGKPVSGSSDN 152
                          89********************97655554......569*************************************************** PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HH CS
                 EIN3  91 LraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelw 180
                          +raWWkekv+fd+ngpaai+ky+ +++++++++++    ++++  l++lqD+tlgSLLs+lmqhcdppqr++plekg++pPWWPtG+e+w
  GSBRNA2T00088016001 153 IRAWWKEKVKFDKNGPAAIAKYEEECIAFGKSDRN----RNSQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGDEEW 238
                          **********************9888888855544....78999********************************************** PP

                          HHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX..... CS
                 EIN3 181 wgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss..... 265
                          w +lgl k+q+ ppy+kphdlkk+wkv+vLtavi+hm p++++i++++rqsk+lqdkm+akes+++l+vlnqee+++++ s+++      
  GSBRNA2T00088016001 239 WVKLGLGKSQS-PPYRKPHDLKKMWKVGVLTAVINHMLPDVAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEESLVQQNSSDNGtsnvt 327
                          **********9.9*********************************************************************94444577 PP

                          XXXX...XXXXXXXXXXXXXXXXXXXXXX.X...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.... CS
                 EIN3 266 slrk...qspkvtlsceqkedvegkkeskik...hvqavkttagfpvvrkrkkkpsesakvsskevsr 327
                          ++r+   ++ +  ++++ ++dv+g++e + +   ++q v+ +++++ +r+rk+++s s +vs +e  +
  GSBRNA2T00088016001 328 EIRRrgnNNAENMVNSDGDYDVDGTEEASGSltaTSQPVRDQDKAKKQRRRKRPRSISGTVSRQEEEQ 395
                          333344577778889999*****777766542115666666667777777777777676666665433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048735.2E-12469311No hitNo description
Gene3DG3DSA:1.10.3180.106.3E-70186319IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.44E-59192314IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MNNYIFIIRE ELKEKNLKLF SKGFIFFEQT CVTDLAMSVA DIRMENEPDD IASDNVAEID  60
VSDEDIDAED LERRMWKDRV RLKRIKERTK SGSQAKEAPK KISDQAQRKK MSRAQDGILK  120
YMLKLMEVCK VRGFVYGIIP EKGKPVSGSS DNIRAWWKEK VKFDKNGPAA IAKYEEECIA  180
FGKSDRNRNS QFVLQDLQDA TLGSLLSSLM QHCDPPQRKY PLEKGTPPPW WPTGDEEWWV  240
KLGLGKSQSP PYRKPHDLKK MWKVGVLTAV INHMLPDVAK IKRHVRQSKC LQDKMTAKES  300
AIWLAVLNQE ESLVQQNSSD NGTSNVTEIR RRGNNNAENM VNSDGDYDVD GTEEASGSLT  360
ATSQPVRDQD KAKKQRRRKR PRSISGTVSR QEEEQRNILP DMYHVDASLL GHNINGTHHH  420
QEGVLEPNIA LGAEENGLEV IVPEFDNNYT YFPPVSEQAM MPVDERPMLY GPNPNQELQF  480
GSGYNFYNPS AVLVNNQEQD VIHTRIEMNA PRSNGFEASV GVGAPDGLHE DGVAGRDLPP  540
QFQRDSNILS PFNDLAAFDS STFYSGFDSY GAFDDDFSWF GA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A5e-861913229140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00088016001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128008.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231160.0EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A078I9Z10.0A0A078I9Z1_BRANA; BnaA02g16550D protein
STRINGBra008110.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46582548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.10.0ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  3. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  4. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  5. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]