PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00088261001
Common NameGSBRNA2T00088261001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 517aa    MW: 57480.5 Da    PI: 8.3858
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00088261001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.31.4e-40262337277
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                          CqvegC+ dls+ak+yhr+h++Ce hsk p+v+v+gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++
  GSBRNA2T00088261001 262 CQVEGCNLDLSSAKDYHRKHRICENHSKFPKVIVNGLERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 337
                          **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.7E-33255323IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.812259336IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-38260340IPR004333Transcription factor, SBP-box
PfamPF031104.9E-31262335IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MNESSKKVEA GERQFDPSPS PNLVLRFAHI TCFLSLSLLF SSPTLVLLSK CSVLCQAKKG  60
SFTPLTTRSF PNSLINRFWC FSVCMECNAK PSLQWEWDNL ISFGTSSAEI PKKQRPMDWE  120
NDGFDCTTFY SSSFSTVAAY GGSSGSDLAH AFSKSSKSTS ISSSSAEVRT YNFTSEAGES  180
VPAGSSEEFA MGIDTSPSLE LSFGSGDPVL GLKLGKRTYF EDFWEVENAK GSAALPVSLA  240
SSSASPVKKS KPISQKLQTP HCQVEGCNLD LSSAKDYHRK HRICENHSKF PKVIVNGLER  300
RFCQQCSRFH CLSEFDEKKR SCRRRLSDHN ARRRKPNPGR TYDGKQHMDF VWNRFALIHP  360
RSEEKFLWPN PKPVPSRGLL QEPATTEMPS KLFTEQCGFG LLDPKTKTTR AELFSKDLLE  420
KVTISSHIST SQDLDGALSL LSNSTPWVSS DQPRRFSLNH HSTSNLQPVV HGSVTQPNSV  480
SSYWQPDPPA VEGSTALPRN GEGQFNDHYN LNQFYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-262623351184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317334KKRSCRRRLSDHNARRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.246031e-106leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00088261001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593075.10.0PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
SwissprotQ9S8400.0SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLA0A078ICF20.0A0A078ICF2_BRANA; BnaC07g17030D protein
STRINGBo7g065290.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65622644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.30.0squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]