PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00088405001
Common NameGSBRNA2T00088405001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 231aa    MW: 24218.2 Da    PI: 9.7844
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00088405001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-073659225
                         -S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                         k ++C  f+ t  C++Gd+C+F H
  GSBRNA2T00088405001 36 KSKPCTKFFSTSGCPFGDNCHFLH 59
                         7789******************** PP
2zf-CCCH33.57e-11196221127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt+ C +fa+ G C +GdrC+FaHg+
  GSBRNA2T00088405001 196 FKTKMCERFAK-GNCTFGDRCHFAHGE 221
                          69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0683461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0843462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-63561IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-53659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-83659IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.51E-1591172IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.1E-15101170IPR004088K Homology domain, type 1
SMARTSM003224.2E-11101171IPR004087K Homology domain
PROSITE profilePS5008414.32102166IPR004088K Homology domain, type 1
PfamPF000131.5E-11104168IPR004088K Homology domain, type 1
CDDcd001052.42E-13104166No hitNo description
Gene3DG3DSA:4.10.1000.105.7E-16190225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.765195222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8195225IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-7195221IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-7196221IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDTRKRAGSF NSNGGGGGFK KSKQEMESYS TGLGSKSKPC TKFFSTSGCP FGDNCHFLHY  60
VPGGYNAVAQ LTNMALPMPQ ASRNMQGPGE SGPGHVSSFG ASATAKISVD ASLAGAIIGK  120
GGVSSKQICR QTGAKLSIQD HERDPNLKNI ELEGTFEQIN EASVMVRELI GRLNSAASRR  180
PPGGGGEGKP HPGSNFKTKM CERFAKGNCT FGDRCHFAHG EAELRRSGVA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.167558e-50flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00088405001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407365.11e-143zinc finger CCCH domain-containing protein 36
SwissprotQ9C7C31e-133C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A078ICP91e-168A0A078ICP9_BRANA; BnaAnng09240D protein
STRINGXP_006407365.11e-143(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-120C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]