PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00088494001
Common NameGSBRNA2T00088494001, LOC106410148
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 544aa    MW: 59226.9 Da    PI: 6.6167
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00088494001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.42e-30169225259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y   Hnh 
  GSBRNA2T00088494001 169 DDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEVKKKVERSR-EGHITEIIYVKAHNHL 225
                          8****************************************.***************5 PP
2WRKY101.16.6e-32349406259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d + v +tY g+Hnh 
  GSBRNA2T00088494001 349 EDGYRWRKYGQKVVKGNPNPRSYYKCTASGCNVTKHVERASDDLTSVLTTYIGKHNHA 406
                          8********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.62E-24167227IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.3E-27167227IPR003657WRKY domain
SMARTSM007745.1E-31168226IPR003657WRKY domain
PfamPF031061.7E-23169224IPR003657WRKY domain
PROSITE profilePS5081122.205169227IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-34333408IPR003657WRKY domain
SuperFamilySSF1182901.06E-27340408IPR003657WRKY domain
PROSITE profilePS5081134.601343408IPR003657WRKY domain
SMARTSM007742.1E-36348407IPR003657WRKY domain
PfamPF031061.5E-24349405IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009555Biological Processpollen development
GO:0009846Biological Processpollen germination
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MPGFDNNFAV MGEWLDPSPN HKKRSKAELE REVSLEDIKN KGFLHASFQE KPCYSSNGLS  60
ERIAARTGFK VPRLKTESIF PSTCLAISSP GVSPATLLES PVFLSNPLTS PTTGKLSSLP  120
SDKAKYEFIE DISLTLSLDP TTNIGSEHDD SQAYGSGLGD LMPSGAPGDD GYNWRKYGQK  180
LVKGSEYPRS YYKCTHPNCE VKKKVERSRE GHITEIIYVK AHNHLKPPTN RRSVTGLSGT  240
GDDMQIDGTG TNENLQWTSP VYEEVGYGSH SGSMQVQSGT QFGYGGVATD AFSKDEEDRT  300
SFMSVSLGYD GQVDESEPKR RKLETSGSSR GTREPKVVVK TTSDIDILED GYRWRKYGQK  360
VVKGNPNPRS YYKCTASGCN VTKHVERASD DLTSVLTTYI GKHNHAVPAA RNSSHVGSGS  420
SGTVQGGLAT QTHNQHVHYP VPRSSSEGMV TANSSLHDFQ PYLRSPSGFS VYYVGEAELT  480
DISVSGLPIG QERFLGLEAL ATGDPDGLML QLAAEPKVEQ MSQQELGLSR SSLIDIMSRL  540
PQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-31169409878Probable WRKY transcription factor 4
2lex_A8e-31169409878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00088494001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300510.0KF430051.1 Brassica rapa WRKY transcription factor 34 (WRKY34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013706090.10.0probable WRKY transcription factor 34
SwissprotO655900.0WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLA0A078JVH00.0A0A078JVH0_BRANA; BnaCnng64000D protein
TrEMBLA0A3P6EKQ20.0A0A3P6EKQ2_BRAOL; Uncharacterized protein
STRINGBo7g110920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141811524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.10.0WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]