PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00088593001

Common Name

GSBRNA2T00088593001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 213aa MW: 24019.1 Da PI: 9.34

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00088593001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	49	71	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H GSBRNA2T00088593001 49 YTCSFCRRDFRSAQALGGHMNVH 71 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.16E-6	46	75	No hit	No description
PROSITE profile	PS50157	11.136	49	76	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	51	71	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MKRTHLASFS SKNKTQEDQE GDTSGNDRVI MNLYNSYEAG LIPWPPKNYT CSFCRRDFRS 60 AQALGGHMNV HRRDRAKLRQ IPSWLFEPHQ QHVPVGNPNP NFGSSSPLTM PAHLDPSLTN 120 QISKTSTFSS DRFDFLDNTS HGGLMKEREK NKSNVCSREL KKSAIDSSCH AAKCEISRGE 180 MNKKHGFTRL ELGMDLRNPN QVLDLELRLG CL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	2e-12	44	71	2	29	superman protein
2l1o_A	2e-12	44	71	2	29	Transcriptional regulator SUPERMAN
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, axillary buds and flowers. {ECO:0000269\|Ref.4}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may regulate cell division and growth. {ECO:0000269\|Ref.4}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00088593001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009142059.1	1e-158	PREDICTED: transcriptional regulator SUPERMAN-like
Refseq	XP_009142060.1	1e-158	PREDICTED: transcriptional regulator SUPERMAN-like
Refseq	XP_009142061.1	1e-158	PREDICTED: transcriptional regulator SUPERMAN-like
Refseq	XP_013747415.1	1e-158	zinc finger protein 11-like
Refseq	XP_022574168.1	1e-158	zinc finger protein 11-like
Swissprot	Q9SLB8	1e-106	ZFP11_ARATH; Zinc finger protein 11
TrEMBL	A0A078IFM2	1e-158	A0A078IFM2_BRANA; BnaA04g24460D protein
TrEMBL	A0A3P6D5R9	1e-158	A0A3P6D5R9_BRACM; Uncharacterized protein
STRING	Bra016878.1-P	1e-158	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9575	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42410.1	1e-109	zinc finger protein 11

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]