PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00088659001
Common NameGSBRNA2T00088659001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 319aa    MW: 36730.7 Da    PI: 8.229
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00088659001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.3e-12166216154
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +r++h ++Er+RR+++N  ++ Lr+l+P++   +  + + a+i+  A++++k L
  GSBRNA2T00088659001 166 KRMTHIAVERNRRRQMNVHLNSLRSLIPSS---YFLRGDQASIVGGAIDFVKIL 216
                          79***************************9...99999**********999866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-15159226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.66E-11163221No hitNo description
Gene3DG3DSA:4.10.280.103.0E-12164221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.145165216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-9166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-7171222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MWTCIFTPSP NELHSVLVDL LDQKVNVRRS LQVQASPEDH SFPLEEDQYS TLTLQGTRLP  60
FQQMLQDPSS VLSFKDPHIL GNYLPYEVPE FHSPFHSDNN HYYQNPFLEG TNEDISSQEL  120
QLNPVDNAFS RRKLRNNNLA ASVSREKRKR RRSKPMKNRE EMESQKRMTH IAVERNRRRQ  180
MNVHLNSLRS LIPSSYFLRG DQASIVGGAI DFVKILEQHL QSLEAQKITQ QTSKLIIDAT  240
VTERHVSLKI QYCQRKQGQL LRSIFLLEKL GLTVLHLNVT SPCNASVSYS FNLKMEEDCN  300
LGSVDEITAA VRQIFDYC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130151RRKLRNNNLAASVSREKRKRRR
2146151KRKRRR
3147151RKRRR
4147152RKRRRS
5147154RKRRRSKP
6166177RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00088659001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018514072.10.0PREDICTED: transcription factor bHLH70-like isoform X1
SwissprotO810371e-133BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A078IFU70.0A0A078IFU7_BRANA; BnaA04g26770D protein
TrEMBLA0A3P6CP910.0A0A3P6CP91_BRACM; Uncharacterized protein
TrEMBLM4FHA50.0M4FHA5_BRARP; Uncharacterized protein
STRINGBra040483.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-134bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]