PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00088680001
Common NameGSBRNA2T00088680001, LOC106423620
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 183aa    MW: 20742 Da    PI: 8.0996
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00088680001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.79.7e-39191181100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          aCaaCk++r+kC+++C+lapyfp+e++++f n+hklFG+sn++k++k ++e +r++am+ l+++A+arardPv G+++++l+l++q++++
  GSBRNA2T00088680001  19 ACAACKYQRKKCTEHCILAPYFPQEKQNQFLNAHKLFGVSNITKFIKGVEECQRDIAMTNLMFHANARARDPVWGVCKIMLDLKNQIACT 108
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +ael+l++++
  GSBRNA2T00088680001 109 QAELNLIHQQ 118
                          ******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575120No hitNo description
PROSITE profilePS5089124.22618119IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-3519116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSLSKFHGGS SSCSSSATAC AACKYQRKKC TEHCILAPYF PQEKQNQFLN AHKLFGVSNI  60
TKFIKGVEEC QRDIAMTNLM FHANARARDP VWGVCKIMLD LKNQIACTQA ELNLIHQQNL  120
AMCRTIALQQ QFGCYSYGDL GDEYLNIDGH VHQKQSLLNY EMFMEMPIKL EKEKVSMDTR  180
MQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-2691201112LOB family transfactor Ramosa2.1
5ly0_B5e-2691201112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00088680001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013719850.11e-136LOB domain-containing protein 7
SwissprotQ9SSM91e-60LBD7_ARATH; LOB domain-containing protein 7
TrEMBLA0A078IFX01e-135A0A078IFX0_BRANA; BnaA02g16210D protein
TrEMBLA0A3P6AGV81e-135A0A3P6AGV8_BRACM; Uncharacterized protein
STRINGBra008062.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.12e-55LOB domain-containing protein 7
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]