PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00088813001
Common NameGSBRNA2T00088813001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 234aa    MW: 26179 Da    PI: 6.2486
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00088813001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.8e-102470447
                         S-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  4 WTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                         WT eE +++ +a + lG +    +W+ Ia+ ++ g++  +++ r+ k+
  GSBRNA2T00088813001 24 WTVEENKRFEKALAVLGDKddleSWSNIAALIP-GKSVDDVIRRYKKL 70
                         *********************************.***********996 PP
2Myb_DNA-binding50.25.9e-16113157347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky
  GSBRNA2T00088813001 113 PWTEEEHRRFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 157
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-51270IPR009057Homeodomain-like
PROSITE profilePS512937.7861973IPR017884SANT domain
SMARTSM007172.3E-52073IPR001005SANT/Myb domain
SuperFamilySSF466893.81E-92374IPR009057Homeodomain-like
CDDcd001671.48E-82470No hitNo description
PfamPF002496.2E-92470IPR001005SANT/Myb domain
PROSITE profilePS5129419.727106162IPR017930Myb domain
SMARTSM007171.9E-13110160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-13110157IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-18110161IPR006447Myb domain, plants
SuperFamilySSF466897.18E-17110161IPR009057Homeodomain-like
CDDcd001671.24E-11113158No hitNo description
PfamPF002494.3E-13113157IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSSTNGGYQE NTNWIFQEVK DAMWTVEENK RFEKALAVLG DKDDLESWSN IAALIPGKSV  60
DDVIRRYKKL EDDISDIEAG LVPDPGYCSD ASAGDYFFGL ENSGYGYNYK GVPWTEEEHR  120
RFLMGLKKYG KGDWRNIARN FVTTRTPTQV ASHAQKYFIR QLTDGKDKRR SSIHDITTVN  180
VPDANAPTTA TPAAATVSPT PTNPFDVFLP PKPHHSFAFS PASSYHNTFP QWS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.73810.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00088813001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618654.11e-160PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H77e-68DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A078IB691e-174A0A078IB69_BRANA; BnaC02g03720D protein
STRINGBo2g002350.11e-159(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148841619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.11e-105MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]