PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00088866001

Common Name

GSBRNA2T00088866001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CAMTA

Protein Properties

Length: 273aa MW: 31111.7 Da PI: 6.5567

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00088866001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.6	3.5e-51	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 +e +rwl+++ei+a+L n++ +++ ++ + pksg++++++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++n GSBRNA2T00088866001 30 EEaYTRWLRPNEIHALLSNHKYFTINVKPVHLPKSGTIVFFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGDDN 119 55589*********************************************************************************** PP CG-1 92 ptfqrrcywlLeeelekivlvhylevk 118 ptf rrcywlL++++e+ivlvhy+e++ GSBRNA2T00088866001 120 PTFVRRCYWLLDKSQEHIVLVHYRETH 146 **********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	75.863	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.1E-72	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.0E-45	32	144	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MAGVDSARLI GSEIHGFHTL QDLDIQTMLE EAYTRWLRPN EIHALLSNHK YFTINVKPVH 60 LPKSGTIVFF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP 120 TFVRRCYWLL DKSQEHIVLV HYRETHEVQA APATPGNSYS SSTTDHLSAK PVAEDINSGV 180 SNACNTVPFF CFVYGFKARS NSLVARNHEI SLHEINTLDW DELLVEADMT NQSSPTEDDV 240 LYFTEQLQTA PMGSAQQGNH QAVYNGSTDI PSY

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00088866001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY128295	0.0	AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013711273.1	1e-179	calmodulin-binding transcription activator 5
Swissprot	O23463	1e-155	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A078JVJ3	0.0	A0A078JVJ3_BRANA; BnaC08g48230D protein (Fragment)
TrEMBL	A0A3P6GMJ4	0.0	A0A3P6GMJ4_BRAOL; Uncharacterized protein
STRING	Bo8g043280.1	1e-178	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM31721	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	1e-158	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]