PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00088932001
Common NameGSBRNA2T00088932001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 179aa    MW: 19742.4 Da    PI: 7.8271
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00088932001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-117296226
                         -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                         ++++C+f++r+G Ck+G+ CkF+H+
  GSBRNA2T00088932001 72 GEKECPFYMRNGSCKFGGHCKFNHP 96
                         7899********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.2E-57097IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1697098IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-97296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-67298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-47695IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MVSVLVFEVH SLLFHFPFSL ESLSYLCYDE DCSITSGLEG ANTCRFSHTK QQTSLPSRPP  60
ELNFLGLPIR PGEKECPFYM RNGSCKFGGH CKFNHPAPTT AIDSPMFRVM HSQNQAPSVY  120
PPERSVLPRS TYNSANNQND RVGTCAHTTA DTVSANLVQL VGSITLYHLH SRLAAPRP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00088932001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018432864.13e-37PREDICTED: zinc finger CCCH domain-containing protein 67
TrEMBLA0A078IB871e-129A0A078IB87_BRANA; BnaCnng15770D protein
STRINGBo9g017580.11e-102(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.12e-29C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]