PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00089119001
Common NameGSBRNA2T00089119001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 180aa    MW: 19762.2 Da    PI: 9.8036
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00089119001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.47.1e-2247138187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                          +W+ +e+ aLi+++r+++++l+rg+lk+++Weev++++  +  g+  +++++qC++k+e+l++ry+++ +++++   ++ +s++++++++
  GSBRNA2T00089119001  47 CWSLEETTALIDGYRDKWHALGRGNLKANHWEEVAEAVaaACPGVapRKTAVQCRHKMEKLRQRYRAEIQRARSVpVARFVSSWVHYKRM 136
                          7************************************977344444488*************************977999********** PP

             trihelix  86 ea 87 
                          ea
  GSBRNA2T00089119001 137 EA 138
                          85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-1946139No hitNo description
PROSITE profilePS500906.3348108IPR017877Myb-like domain
SMARTSM005954.4E-1055144IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MSDPDSPPTH DPIPDRDQPE PASATDPKIA SVPATASKSS RRLPPPCWSL EETTALIDGY  60
RDKWHALGRG NLKANHWEEV AEAVAAACPG VAPRKTAVQC RHKMEKLRQR YRAEIQRARS  120
VPVARFVSSW VHYKRMEAME ITKPDGEENQ FSGGGPTPRF FNRNAAAAAA GSGFGYRRV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.60150.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00089119001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3155987e-83AJ315598.1 Brassica napus microsatellite, clone Na10-F06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691635.11e-105trihelix transcription factor ASIL2-like
TrEMBLA0A078IGG71e-129A0A078IGG7_BRANA; BnaC04g05120D protein
STRINGBo4g023990.11e-103(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-74Trihelix family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]