PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00089266001

Common Name

GSBRNA2T00089266001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 776aa MW: 86147.3 Da PI: 5.7205

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00089266001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.7	1.1e-07	656	703	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 W E + lv++v ++G g W+ I r +Rt+ ++k++w+++l GSBRNA2T00089266001 656 WCLSEVKNLVEGVSKYGVGKWSVIKRLSYssfPHRTPVDLKDKWRNLL 703 77789999****************9999999***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07011	4.2E-36	15	95	IPR009741	Protein of unknown function DUF1313
PROSITE profile	PS51294	11.777	648	707	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-12	649	706	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.59E-15	650	705	IPR009057	Homeodomain-like
SMART	SM00717	5.6E-6	652	705	IPR001005	SANT/Myb domain
CDD	cd11660	1.54E-19	654	704	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence Send to blast
MEGDVFSGFG ERHNMDGKLL QSFQKSFVDV QDILDQNRLL INEINQNHES KQPDNLGRNV 60 GLIKELNNNI RRVASLYGDL SHSFARSMDA SSEGESSGTL KSDGKANQKR FRSASLSGEN 120 FELGIFSGKL SDTLVTVFSA VFDYGEMFQD AVAHTSGASL SSENQIENPV VYKLVRVAQD 180 GRLVPATDEE MLEVKDLVEN NENDMSVVPD PGQYEYITNE GSPSQFLQLD SLEGLFQSET 240 AEAYTDNLNS RLEVCPPPLE LLQSKEELVY GSQMPFPLLD TNYHSSNELP GDEEFVLSEV 300 LLQEPVCFSS DGCGIDQPMD VSPYSNAAGG SPKAPAVSTT ASSPGASRDT EEICLGNLSI 360 KALQDTFRAT FGRETTCKDK LWLQRKIKMG RVNPCVIPTT SQTVNDNKLI LGGQDNCNDT 420 SVDEGRASNC KGTPSSPNDF VKGHPNDFEY SPVEAFVDHY SGNEDFEGEY RSAKRVRKAT 480 RRYIEEISKV DDEKQESKES LIPSKDERSI STVSSGRRVV VTRMVSLGGS IIQVPYVSHV 540 RRSRPRENIM ALGEFHSKSW EVKAMPEESN LSVSQSQLNS DVKRVSGVKS VSGPDQKKLT 600 THRQSYKDHS KPEVDEDIME PEYMDSSGDS SDDSSYNRVD RPVTQSAMRR KHHRAWCLSE 660 VKNLVEGVSK YGVGKWSVIK RLSYSSFPHR TPVDLKDKWR NLLKACFARA PLNKMGSMRK 720 YGSMAIPSEV LSEVRELAQK KSHVSPARKA RMALIPKVAF VVKPAYKPVY GTTVF*

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence Send to blast

MEGDVFSGFG ERHNMDGKLL QSFQKSFVDV QDILDQNRLL INEINQNHES KQPDNLGRNV  60
GLIKELNNNI RRVASLYGDL SHSFARSMDA SSEGESSGTL KSDGKANQKR FRSASLSGEN  120
FELGIFSGKL SDTLVTVFSA VFDYGEMFQD AVAHTSGASL SSENQIENPV VYKLVRVAQD  180
GRLVPATDEE MLEVKDLVEN NENDMSVVPD PGQYEYITNE GSPSQFLQLD SLEGLFQSET  240
AEAYTDNLNS RLEVCPPPLE LLQSKEELVY GSQMPFPLLD TNYHSSNELP GDEEFVLSEV  300
LLQEPVCFSS DGCGIDQPMD VSPYSNAAGG SPKAPAVSTT ASSPGASRDT EEICLGNLSI  360
KALQDTFRAT FGRETTCKDK LWLQRKIKMG RVNPCVIPTT SQTVNDNKLI LGGQDNCNDT  420
SVDEGRASNC KGTPSSPNDF VKGHPNDFEY SPVEAFVDHY SGNEDFEGEY RSAKRVRKAT  480
RRYIEEISKV DDEKQESKES LIPSKDERSI STVSSGRRVV VTRMVSLGGS IIQVPYVSHV  540
RRSRPRENIM ALGEFHSKSW EVKAMPEESN LSVSQSQLNS DVKRVSGVKS VSGPDQKKLT  600
THRQSYKDHS KPEVDEDIME PEYMDSSGDS SDDSSYNRVD RPVTQSAMRR KHHRAWCLSE  660
VKNLVEGVSK YGVGKWSVIK RLSYSSFPHR TPVDLKDKWR NLLKACFARA PLNKMGSMRK  720
YGSMAIPSEV LSEVRELAQK KSHVSPARKA RMALIPKVAF VVKPAYKPVY GTTVF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.27951	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00089266001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK220611	1e-121	AK220611.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL19-61-J03.
GenBank	BT025588	1e-121	BT025588.1 Arabidopsis thaliana At1g17455 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013638558.1	0.0	PREDICTED: uncharacterized protein LOC106343795
Refseq	XP_013638559.1	0.0	PREDICTED: uncharacterized protein LOC106343795
TrEMBL	A0A078IGK9	0.0	A0A078IGK9_BRANA; BnaC05g13570D protein
STRING	Bo5g023810.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4364	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17460.1	0.0	TRF-like 3

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]