PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00089319001
Common NameGSBRNA2T00089319001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 556aa    MW: 66455.1 Da    PI: 9.7103
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00089319001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-06138154825
                          GGGGTS--TTTTT-SS-S CS
              zf-CCCH   8 ffartGtCkyGdrCkFaH 25 
                          ff+r G+Ck G+ CkF H
  GSBRNA2T00089319001 138 FFLR-GFCKDGSACKFLH 154
                          8899.************* PP
2zf-CCCH222.8e-07326343825
                          GGGGTS--TTTTT-SS-S CS
              zf-CCCH   8 ffartGtCkyGdrCkFaH 25 
                          +f+r G+Ck G+ CkF+H
  GSBRNA2T00089319001 326 RFFRRGFCKDGSDCKFIH 343
                          78888************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.35134156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.014137157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.122316346IPR000571Zinc finger, CCCH-type
SMARTSM003560.12323345IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-5326343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MGDDARESKR QARRRESRSM EETKSPALRF DCPERNPDFR PERRHDNKES YTDIKRRTSH  60
EKDSKSLLLK KKKKKMVKKL TFFWVFIYTV VSVSVEAIVF SIILVVRYTF DLSLWILVAK  120
VTQSSFRMIV SSLSYLQFFL RGFCKDGSAC KFLHARDKEA PMRQALSSNE KKNSPKEMDG  180
EEPMRQSSRR QETESDYGQE EKETKDWELK QIEKTEWQRR EAQRNVKEHR QREGQRREAQ  240
ENVQEHRQKE TSGCQRYSEK KRREAQENTQ ERRFTREAQE MGRRKSKAFS EEQRVKERNM  300
DLRSSKSDVR TDRRHKRDPR ICAEKRFFRR GFCKDGSDCK FIHAKNNEAL RLPNTMRQPL  360
SHPKDRDGAE TMRQRDNTEW QRGEAQENVH EHRQRDITEC QRYYEMGRRD AQEIVVKQHR  420
QRDITESLRY FEMGRRDAQV IVQQHRQREA SGRQRYLEEE KSEEAQENDQ EQRLMVTPLD  480
GRFDERRHET ESSSMAEKRE ELFTSLQSVF KDVIDDIAAG YERVGTEHGE GNVGRQRVEA  540
EEIVQEQSNR DGDVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15474KRRTSHEKDSKSLLLKKKKKK
26978KKKKKKMVKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00089319001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013660363.11e-156putative zinc finger CCCH domain-containing protein 9
TrEMBLA0A078IEA10.0A0A078IEA1_BRANA; BnaA09g26750D protein
STRINGBra032326.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1879646
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]