PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00089351001
Common NameGSBRNA2T00089351001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 288aa    MW: 32885.8 Da    PI: 9.2703
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00089351001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019426123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ykC+ C ksF +   L  H r+H
  GSBRNA2T00089351001  4 YKCKFCFKSFVNERALDGHVRSH 26
                         9********************99 PP
2zf-C2H215.45.1e-05178200123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cgk+F++   L  H  +H
  GSBRNA2T00089351001 178 FTCETCGKVFKSYQALGGHRASH 200
                          89***********9999998887 PP
3zf-C2H210.60.0017229251123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++F +   L  H r+H
  GSBRNA2T00089351001 229 HECPICLRVFASGQALGGHKRSH 251
                          79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.54E-9326No hitNo description
Gene3DG3DSA:3.30.160.609.1E-4326IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138945.0E-4426No hitNo description
PROSITE profilePS5015711.219431IPR007087Zinc finger, C2H2
SMARTSM003550.0034426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576675.54E-9173200No hitNo description
SMARTSM003550.02178200IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-11178202IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.053178205IPR007087Zinc finger, C2H2
PROSITE patternPS000280180200IPR007087Zinc finger, C2H2
SMARTSM003550.23229251IPR015880Zinc finger, C2H2-like
PfamPF139124.8E-12229251IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058229251IPR007087Zinc finger, C2H2
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MESYKCKFCF KSFVNERALD GHVRSHMPTL PNFCIEEEEE KVRPSQLSGD TESDVSSSSP  60
EEERHRTMDD DQKFAFTGSQ RNIINLTRKR SKRTRKLDSF ATKKMKTSQL GYKTEPEPHH  120
SSASDTTTDE DLAFCLMMLS RDKWKKKNKT SSSHKELVEE IDDNSSKMNR ATTTKGRFTC  180
ETCGKVFKSY QALGGHRASH KKNRVSNKTE QRSETEYDNV VVAPEKRIHE CPICLRVFAS  240
GQALGGHKRS HGLGNLSVNH HQVHRTESVK QRMLDLNFPA PTEEDKR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00089351001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691276.10.0zinc finger protein ZAT9-like
RefseqXP_022556051.10.0zinc finger protein ZAT9-like
SwissprotQ9M2021e-133ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A078IGT50.0A0A078IGT5_BRANA; BnaC04g22120D protein
STRINGBo4g104940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-121C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]